PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44428.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family TALE
Protein Properties Length: 324aa    MW: 36762.3 Da    PI: 4.8325
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44428.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox261.6e-082673012155
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 k +yp++ ++  LA+ +gL+++q+ +WF N+R ++
  KFK44428.1 267 KWPYPTEGDKIALADATGLDQKQINNWFINQRKRH 301
                 569*****************************885 PP
2ELK331.4e-11221242122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 +LK++LlrKY+++++sLk EFs
  KFK44428.1 221 DLKDRLLRKYGSRISSLKLEFS 242
                 69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.4E-2379123IPR005540KNOX1
PfamPF037901.2E-2181122IPR005540KNOX1
SMARTSM012562.6E-24130181IPR005541KNOX2
PfamPF037916.8E-24134180IPR005541KNOX2
PfamPF037895.1E-8221242IPR005539ELK domain
PROSITE profilePS5121310.353221241IPR005539ELK domain
SMARTSM011882.1E-5221242IPR005539ELK domain
PROSITE profilePS5007112.438241304IPR001356Homeobox domain
SuperFamilySSF466891.24E-19242316IPR009057Homeodomain-like
SMARTSM003891.1E-12243308IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-27246305IPR009057Homeodomain-like
CDDcd000861.29E-11250305No hitNo description
PfamPF059201.3E-17261300IPR008422Homeobox KN domain
PROSITE patternPS000270279302IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDGMYGFHST GDYSDKAVLM MPSPESLMFS SDYQALLCSD NRVSDVFGSD ELLSAAASAL  60
SSEAASEIRR NDDHNVSLSV IKAKIASHPL YPRLLQAYID CQKVGAPLEI ACLLEEIQRE  120
NHVYKRDVVL SSYFGADHEL DEFMETYCDI LVKYKSDLAR PFDEATTFLN KIEMQLRNLC  180
TGVSSARSLS EDGVISSDEE ELSGGDEVAE DGKLRCEADR DLKDRLLRKY GSRISSLKLE  240
FSKKKKKGKL PREARQALLD WWNSHYKWPY PTEGDKIALA DATGLDQKQI NNWFINQRKR  300
HWKPSENMPF AMMDDSNGSF FTEE
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44428.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_850951.20.0homeobox protein knotted-1-like 6
SwissprotQ84JS60.0KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A087HQM60.0A0A087HQM6_ARAAL; Uncharacterized protein
STRINGA0A087HQM60.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-176KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]