PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44344.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 297aa    MW: 34147.6 Da    PI: 6.5905
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44344.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.24.1e-15106157155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++Y+k+L+
  KFK44344.1 106 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YTQRGDQASIVGGAINYVKELE 157
                 79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.02E-13104161No hitNo description
Gene3DG3DSA:4.10.280.102.9E-14105159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-17105172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.904105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-12106157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MPLDAVVYPQ DPFGYLSNCK DFMFHDLYYH QEDVVLAQDT KKNIDKLGQE QSFVQDDKDH  60
QWRDYHHCPL IPSLEEDMEM NHPPMQQRKK RRRTRNSKNK EEIENQRMTH IAVERNRRKQ  120
MNEYLAVLRS LMPSSYTQRG DQASIVGGAI NYVKELEHIL QSMEPNRTMT TTTTHEADTS  180
TSSLVGPFSD FFTFPQFSTK SSSVTETSSS PAEIEVTVAE SHANIKIMAK KKPRQLLKLV  240
ASIQSLRLTL LHLNVTTLDD SILYSISVKV EEGSKLNTVD DIATALNQII RRIQDES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18692QRKKRRR
2106117RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44344.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110135.11e-164PREDICTED: transcription factor bHLH94-like
SwissprotQ9SK911e-159BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A087HQE20.0A0A087HQE2_ARAAL; Uncharacterized protein
STRINGA0A087HQE20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-147bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]