PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44321.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MIKC_MADS
Protein Properties Length: 333aa    MW: 37899.4 Da    PI: 4.68
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44321.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.37.4e-27958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++++l  +s
  KFK44321.1  9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSDRLSLFS 58
                79******************************************998776 PP
2K-box18.77.5e-081211891179
       K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
                 ++  e l+qe+ +L++++++ ++e+R++  + +   s+++ +  e+qL + l+++ +++++ll ++++ 
  KFK44321.1 121 NSGIEDLEQEVCRLQQQLQMAEEELRRYEPDPVRFTSMEDYEVCEKQLLDTLTHVVQRREHLLSNHLSS 189
                 5667899*********************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.973161IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-36160IPR002100Transcription factor, MADS-box
CDDcd002653.25E-34275No hitNo description
SuperFamilySSF554557.72E-29283IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-25323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-241055IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRLSLFSGK  60
TRIEDVFTRF INLPNQEQEN ALYPEQRRPD IQSKEYLLRI LQQLKAENDI ALQLTNPAAI  120
NSGIEDLEQE VCRLQQQLQM AEEELRRYEP DPVRFTSMED YEVCEKQLLD TLTHVVQRRE  180
HLLSNHLSSY EASTMQQSMA GPFVNDVVEG WLPENAPNQA HLFDASAHSN QLRELSSAMY  240
EPLLQGSSSS SNQNNMSECH VANHNGEMFP EWAQTYTSSA LFASMHQHGG VGPSIEEMMP  300
GQQGEIPAVT KTEAQADHEV ADYETRIPQL SSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A6e-16270168Myocyte-specific enhancer factor 2A
3mu6_B6e-16270168Myocyte-specific enhancer factor 2A
3mu6_C6e-16270168Myocyte-specific enhancer factor 2A
3mu6_D6e-16270168Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44321.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0564570.0DQ056457.1 Arabidopsis thaliana MADS-box family protein (At1g22130) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008876.10.0agamous-like MADS-box protein AGL104
SwissprotQ9LM460.0AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A087HQB90.0A0A087HQB9_ARAAL; Uncharacterized protein
STRINGA0A087HQB90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.10.0AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]