PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK43842.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family AP2
Protein Properties Length: 334aa    MW: 38095 Da    PI: 7.6171
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK43842.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.73.8e-1547106155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s ++GV++++++gr++A+++d  s+n    k+ ++++lg ++ ++ Aa+a++ a++k++g
  KFK43842.1  47 SVHRGVTRHRWTGRYEAHLWDkNSWNEtqsKKgRQVYLGAYDEEDAAARAYDLAALKYWG 106
                 689******************888877877557**********99*************98 PP
2AP250.64.8e-16149200155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV  ++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  KFK43842.1 149 SKYRGVAKHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDVAAIEYRG 200
                 89****************99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.08E-1647115IPR016177DNA-binding domain
PROSITE profilePS5103220.0648114IPR001471AP2/ERF domain
PfamPF008478.7E-1248106IPR001471AP2/ERF domain
SMARTSM003803.3E-2448120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-1548114IPR001471AP2/ERF domain
PRINTSPR003672.3E-54960IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-17149210IPR016177DNA-binding domain
CDDcd000182.32E-24149210No hitNo description
PfamPF008471.5E-11149200IPR001471AP2/ERF domain
PROSITE profilePS5103217.965150208IPR001471AP2/ERF domain
SMARTSM003809.5E-26150214IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-17150208IPR001471AP2/ERF domain
PRINTSPR003672.3E-5190210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEEISRRSKK SISVENETGD ESAASVDLKT KRKRRSQPRD APPQRSSVHR GVTRHRWTGR  60
YEAHLWDKNS WNETQSKKGR QVYLGAYDEE DAAARAYDLA ALKYWGRDTI LNFPLCKYEE  120
DIKEMESQSK EEYIGSLRRK SSGFSRGVSK YRGVAKHHHN GRWEARIGRV FGNKYLYLGT  180
YATQEEAAIA YDVAAIEYRG LNAVTNFDIS RYLKSPAPEN PNDAANQLPE IRQSDPNPFT  240
NPNHESELWK SQSSSDKNDD RKSKLLKSSP LNGEEVVGPS TPPEIVPPRR SFPADIQTYF  300
GCQDSGKLTT EEDVIFGDFD SFLTRGFYSE LNDC
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK43842.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638688.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN40.0AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A087HNZ00.0A0A087HNZ0_ARAAL; Uncharacterized protein
STRINGA0A087HNZ00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-174ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]