PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK43756.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | WOX | ||||||||
Protein Properties | Length: 271aa MW: 32148.5 Da PI: 6.9534 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.5 | 3.1e-20 | 39 | 97 | 3 | 56 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 +R+++t+eq +L+e++++ +r+p++++++e+A++l +++ ++V++WFqN++ +e+ KFK43756.1 39 SRWNPTPEQMMVLQEVYNSgTRTPTTQQIQEIASQLqkygRIEGKNVFYWFQNHKSRER 97 7*****************99*************************************98 PP | |||||||
2 | Wus_type_Homeobox | 110.9 | 6.8e-36 | 38 | 99 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++RW+PtpeQ+++L+e+y+sG+rtP++++iq+i+++L++yG+ie+kNVfyWFQN+k+Rer k KFK43756.1 38 QSRWNPTPEQMMVLQEVYNSGTRTPTTQQIQEIASQLQKYGRIEGKNVFYWFQNHKSRERLK 99 79**********************************************************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 8.2E-5 | 36 | 103 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-12 | 38 | 99 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.59E-5 | 38 | 97 | No hit | No description |
PROSITE profile | PS50071 | 10.77 | 38 | 99 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.5E-18 | 39 | 97 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-8 | 39 | 97 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048314 | Biological Process | embryo sac morphogenesis | ||||
GO:0048446 | Biological Process | petal morphogenesis | ||||
GO:0048482 | Biological Process | plant ovule morphogenesis | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0048353 | Cellular Component | primary endosperm nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MGYNKDQNVT PLPLLLYSTN YTTSHARPHC DEQIITGQSR WNPTPEQMMV LQEVYNSGTR 60 TPTTQQIQEI ASQLQKYGRI EGKNVFYWFQ NHKSRERLKR RRHNQQESFG FNNVHEERLP 120 NKENVVALGN KNSSVLRRRG DHRLIHTVTC LSSSSTHTQN NNIDDDGKME EYDHGRMEEE 180 KEATCQNQIN RINTFYHLNI TSKEREASFN EHKYNLNEEE EETRKSRTLD LFPVRDNQVK 240 TDATSLEEKN TKPDHLCCNY YYYYEFMPLM N |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK43756.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024008066.1 | 1e-117 | WUSCHEL-related homeobox 6 | ||||
TrEMBL | A0A087HNQ4 | 0.0 | A0A087HNQ4_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HNQ4 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13369 | 18 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01500.1 | 2e-42 | WOX family protein |