PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK43691.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family BBR-BPC
Protein Properties Length: 272aa    MW: 30378.7 Da    PI: 10.195
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK43691.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3374.8e-10312721301
   GAGA_bind   1 mdddgsrernkgyyepa..aslkenlglqlmssiaerdaki....rernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslas 93 
                 mdddg+  rn+gyyepa  +++k nlglqlms+i +r++k+    r+ nl ++++ ++  +  m++    +++++       +++k++++l+v+ns   
  KFK43691.1   1 MDDDGF--RNWGYYEPAaaTTFKGNLGLQLMSTI-DRNTKPflpgRDPNL-MIGSYHPDPPVHMSY----NWINQ-------QKDKFFNMLPVTNS--- 81 
                 99**99..9******99889**************.9**************.999999999999***....*****.......899*******9997... PP

   GAGA_bind  94 alpvgvqvlsgtksidslqq.lse..pqledsavelreeeklealpieeaaeeak.ekkkkkkrqrakkpkekkakkkkkksekskkkvkkesadersk 188
                   p++ +vl++t+s+ ++ + l++  +q+e+++v+             +++e    +k+k+++++ ++ +k+kk +k+k+++    ++++++   +r+k
  KFK43691.1  82 --PNYGNVLPETSSAPTMPMnLHHhhHQTEENQVK-------------CEEEILLpKKRKPNSKAGSTPTKAKKPRKPKDEN----SNSTTNV--SRVK 159
                 ..99**************99422212333333333.............2222222023333334445556777777888833....3333333..689* PP

   GAGA_bind 189 aekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkd 287
                   kks+dlv+ngvs+D+s++PvP+C+CtGa++qCY+WG+GGWqSaCCtt+iS++PLP+stkrrgaRi+grKmSqgafkk+LekLa++G++++np+DLk+
  KFK43691.1 160 PAKKSVDLVINGVSMDISGIPVPICTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKVLEKLASDGFNFGNPIDLKS 258
                 *************************************************************************************************** PP

   GAGA_bind 288 hWAkHGtnkfvtir 301
                 hWA+HGtnkfvtir
  KFK43691.1 259 HWARHGTNKFVTIR 272
                 *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062173.7E-941272IPR010409GAGA-binding transcriptional activator
SMARTSM012266.9E-1641272IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDDDGFRNWG YYEPAAATTF KGNLGLQLMS TIDRNTKPFL PGRDPNLMIG SYHPDPPVHM  60
SYNWINQQKD KFFNMLPVTN SPNYGNVLPE TSSAPTMPMN LHHHHHQTEE NQVKCEEEIL  120
LPKKRKPNSK AGSTPTKAKK PRKPKDENSN STTNVSRVKP AKKSVDLVIN GVSMDISGIP  180
VPICTCTGAP QQCYRWGCGG WQSACCTTNI SMHPLPMSTK RRGARISGRK MSQGAFKKVL  240
EKLASDGFNF GNPIDLKSHW ARHGTNKFVT IR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK43691.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010458978.11e-174PREDICTED: protein BASIC PENTACYSTEINE2-like
SwissprotQ9LDE21e-163BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBLA0A087HNI90.0A0A087HNI9_ARAAL; Uncharacterized protein
STRINGA0A087HNI90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-165basic pentacysteine 2
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Simonini S,Kater MM
    Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance.
    J. Exp. Bot., 2014. 65(6): p. 1455-65
    [PMID:24482368]