PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK43591.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family RAV
Protein Properties Length: 340aa    MW: 38444 Da    PI: 9.5227
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK43591.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.75.9e-1355103155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a  +++g
  KFK43591.1  55 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAVHRFRG 103
                 89****9888.8*********3.....5**********99***********9998 PP
2B3103.11.5e-32182285199
                 EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                 f+k+ tpsdv+k++rlv+pk++ae+h     ++++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F++++ ++++l++
  KFK43591.1 182 FEKAVTPSDVGKLNRLVIPKHHAEKHfplpsSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSDGQDQQLYI 280
                 89****************************9888889***************************************************98779999999 PP

                 EEE-S CS
          B3  95 kvfrk 99 
                 ++ ++
  KFK43591.1 281 GWKSR 285
                 99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.01E-1755111IPR016177DNA-binding domain
PfamPF008474.8E-855103IPR001471AP2/ERF domain
CDDcd000181.99E-2655113No hitNo description
Gene3DG3DSA:3.30.730.108.9E-2156112IPR001471AP2/ERF domain
PROSITE profilePS5103220.19256111IPR001471AP2/ERF domain
SMARTSM003806.4E-2956117IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.108.5E-43174288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-33177288IPR015300DNA-binding pseudobarrel domain
CDDcd100172.38E-29180273No hitNo description
PfamPF023621.4E-29182285IPR003340B3 DNA binding domain
SMARTSM010191.5E-26182286IPR003340B3 DNA binding domain
PROSITE profilePS5086314.551182286IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEVSSVDEST TSTGSICETT PAKPPVSLYR MGSGTSVVLD SENGVEAESR KLPSSKYKGV  60
VPQPNGRWGA QIYEKHQRVW LGTFNEEDEA ARAYDVAVHR FRGRDAVTNF KDVKLDEGEI  120
EFLNSHSKSE IVDMLRKHTY NEELEQSKRR RNGNGNNVRN TTKTTALCNY ETTEFRSAEP  180
LFEKAVTPSD VGKLNRLVIP KHHAEKHFPL PSSNVSVKGV LLNFEDVNGK VWRFRYSYWN  240
SSQSYVLTKG WSRFVKEKNL RAGDVVSFSR SDGQDQQLYI GWKSRSGSDL EPGRVLRLFG  300
VDISPEKSLR NDAVGNKRVN DSIEMLSLVC SKKQRIFHAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-7617829110123DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK43591.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530751e-166AK353075.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-J24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417140.10.0AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9ZWM90.0RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A087HN890.0A0A087HN89_ARAAL; Ap2 erf and b3 domain-containing transcription factor rav2
STRINGA0A087HN890.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.10.0related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]