PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK43559.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 219aa    MW: 24486 Da    PI: 4.545
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK43559.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.6e-16956354
         AP2  3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54
                y GVr+++ +gr++AeIr  +     +  r++lg+f+taeeAa a++ a +++ 
  KFK43559.1  9 YLGVRRRP-WGRYAAEIRNpF-----TkERHWLGTFDTAEEAAFAYDVASRSIS 56
                88******.**********66.....34*******************9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.34E-27764No hitNo description
Gene3DG3DSA:3.30.730.101.0E-25864IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-19865IPR016177DNA-binding domain
PROSITE profilePS5103219.691865IPR001471AP2/ERF domain
SMARTSM003802.5E-26871IPR001471AP2/ERF domain
PRINTSPR003671.4E-8920IPR001471AP2/ERF domain
PfamPF008472.7E-9954IPR001471AP2/ERF domain
PRINTSPR003671.4E-83147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MTKQKDKNYL GVRRRPWGRY AAEIRNPFTK ERHWLGTFDT AEEAAFAYDV ASRSISGSLV  60
KTNFFYTENI SLPLQLLQSS SLDKDCVNPT VSLGPDMSLE SSSFCFLQDQ PFDNNHFASG  120
SISYANLTNS FSHCYDNDQI CKSNEMSLPS LPNDMSSSLF SHQANIGEHG YADQMKIGSV  180
LSDETHCLEY DFLLSDVPTS LLNDVNGDPP QDSRSSSFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-17564262ATERF1
3gcc_A7e-17564262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK43559.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934542e-62AB493454.1 Arabidopsis thaliana At1g12890 mRNA for hypothetical protein, partial cds, clone: RAAt1g12890.
GenBankCP0026842e-62CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF13K232e-62AC012187.3 Sequence of BAC F13K23 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417179.11e-100ethylene-responsive transcription factor ERF088
SwissprotQ3E7031e-83ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLA0A087HN571e-162A0A087HN57_ARAAL; Uncharacterized protein
STRINGA0A087HN571e-163(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.12e-84ERF family protein