PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK43307.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 360aa    MW: 39511.6 Da    PI: 6.0107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK43307.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.3e-10209257355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  KFK43307.1 209 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 257
                 58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-17204273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.52E-11204261No hitNo description
PROSITE profilePS5088815.485206256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16207274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-7209257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10212262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAGESNEGFK NGDDESGISR VGITSMPVYA NAKADPFFSS SDWDPVVSGI NGGGSGFSSS  60
SHYPSMAMDN PGMSCFPHYQ TGSGSGYADM SASLLPFGDC GGGGHFLGSD KKGESVGRLS  120
HEDHHHQVSD DGVLGSGSPN RKRRQLETDS QWNKKAVEEF QEDPQRGSDQ SQKKHKTEQS  180
KETKESSQSE EAPKENYIHM RARRGQATNS HSLAERVRRE KISERMRLLQ ELVPGCNKIT  240
GKAVMLDEII NYVQSLQQQV EFLSMKLATV NPELNIDIDR ILAKDLLQSR DRNTTTLGLN  300
PFSGYQGPIP NISTATNPQY NPLPQTTLES ELQNLYQMGF VSNPSTMSSF SPNGRLKPEL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK43307.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2218060.0AK221806.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, complete cds, clone: RAFL21-86-B04.
GenBankBT0126550.0BT012655.1 Arabidopsis thaliana At1g10120 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023645253.10.0transcription factor bHLH74
SwissprotQ6NKN90.0BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A087HMF50.0A0A087HMF5_ARAAL; Uncharacterized protein
STRINGA0A087HMF50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51962849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]