PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK43270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 442aa MW: 47476.9 Da PI: 9.7295 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.5 | 5.4e-07 | 199 | 243 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH..HHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar..tmgkgRtlkqcksrw 44 r+ W+ +Ed+ l+ av++ G g+W+ I + g Rt q+ rw KFK43270.1 199 RKIWSSDEDKVLIAAVRRCGEGNWAQIVNgdFKG-ERTNSQLAQRW 243 566**********************995411344.77777777777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.284 | 194 | 251 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.37E-11 | 196 | 249 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-11 | 196 | 246 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.0E-6 | 198 | 249 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 3.24E-11 | 202 | 248 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MVGSSRSNDQ RKRKISEGDI ATLLQRYDVK TILRLLQEMS YYSEVKMDWN ELVKKTTTGI 60 TNAREYQLLW RHLSYRYPLL PVDEDAQPLD DDSDMECELE VSPAVSSEAT MEAIAYVKVM 120 AAAYVPNESD ILDDSTVEAP MTINIPYSLP EGTKEPSESP WSSRGMNITF PVCLQKASST 180 EGMNGNGSAC SSMAVRKKRK IWSSDEDKVL IAAVRRCGEG NWAQIVNGDF KGERTNSQLA 240 QRWALIRRRR CDIPTPRSLS SLQQTEAHKA VNNALSVALG KPPPSKKLAV GTSPKILSFG 300 ITKTQANGGS SSQGQQQSKP VVQALPQTAT SVSASKSRVA VRKTTPTSTT RSDLMVKANS 360 VAAAACMGGV GISTAALVPK AEPGKTDAPL VPKTEPAKNA STACMSRPSG GSFSLPKVEP 420 GKSVTAYSIA KAVGPANTRA SS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK43270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020868169.1 | 0.0 | uncharacterized protein LOC9328581 isoform X1 | ||||
TrEMBL | A0A087HMB8 | 0.0 | A0A087HMB8_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HMB8 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4823 | 27 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 0.0 | MYB_related family protein |