PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK43109.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | NF-YC | ||||||||
Protein Properties | Length: 211aa MW: 23550.1 Da PI: 7.5106 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 46.6 | 7.4e-15 | 107 | 193 | 13 | 99 |
NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +++ k ++P+ ri++i++ d+ +i +a l+ ka e+fi ++ ++ + + k++ ++ ++++v++ + ++fl d vp++ KFK43109.1 107 VEEAKSFRFPMNRIRRIMRNDDSAPQIMQDAVFLVNKATEMFIERFSEEAYESSVQDKKKFIHYKHLSSVVSNDNRYEFLADCVPEK 193 56778899****************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.7E-19 | 106 | 192 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-21 | 114 | 177 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 8.1E-24 | 115 | 192 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MVSSKKSSKE TKPRSDGVNN TGARSTRSSG AKTKKNPSNN ANSRDIVKKD PEVYEISESS 60 STGSVDEARG GDVSNKGRNG KGVVIPTKKR KNGEEEEEGE NVNGGSVEEA KSFRFPMNRI 120 RRIMRNDDSA PQIMQDAVFL VNKATEMFIE RFSEEAYESS VQDKKKFIHY KHLSSVVSND 180 NRYEFLADCV PEKLKAEDAL EEWEKAMTDA V |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK43109.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229011 | 4e-97 | AK229011.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-31-C07. | |||
GenBank | AK229266 | 4e-97 | AK229266.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-54-O22. | |||
GenBank | AY086815 | 4e-97 | AY086815.1 Arabidopsis thaliana clone 28026 mRNA, complete sequence. | |||
GenBank | BT025266 | 4e-97 | BT025266.1 Arabidopsis thaliana At1g07980 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023645785.1 | 1e-86 | nuclear transcription factor Y subunit gamma | ||||
TrEMBL | A0A087HLV7 | 1e-152 | A0A087HLV7_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HLV7 | 1e-152 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11190 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 3e-69 | nuclear factor Y, subunit C10 |