PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK43106.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | LBD | ||||||||
Protein Properties | Length: 134aa MW: 14493.7 Da PI: 8.4814 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.7 | 4e-43 | 32 | 131 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C ++Cvlapyfp ++p+kf ++h++FGasn++kll++lpe++r da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+la+++ KFK43106.1 32 PCAACKILRRRCGENCVLAPYFPPTEPAKFTIAHRVFGASNIIKLLQELPESQRADAVNSMVYEAGARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQV 130 7**********************************************************************************************9986 PP DUF260 100 e 100 e KFK43106.1 131 E 131 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.238 | 31 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.7E-43 | 32 | 129 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MENKGEASPS IISASPTSSP PPPPSPRMVL SPCAACKILR RRCGENCVLA PYFPPTEPAK 60 FTIAHRVFGA SNIIKLLQEL PESQRADAVN SMVYEAGARI RDPVYGCAGA IYHLQRQVSE 120 LQAQLAKAQV EIGY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-42 | 31 | 132 | 10 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-42 | 31 | 132 | 10 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK43106.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473841 | 1e-113 | AB473841.1 Arabidopsis thaliana ASL8 mRNA for ASYMMETRIC LEAVES2-like 8 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018480879.1 | 2e-78 | PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 1e-69 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A087HLV4 | 9e-93 | A0A087HLV4_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HLV4 | 1e-93 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1141 | 28 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 3e-71 | LOB domain-containing protein 1 |