PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KFK42944.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 27796.9 Da PI: 9.2787 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.7 | 2.7e-05 | 98 | 131 | 18 | 54 |
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++++ Lr l+P + K + a+i++ A+eYIk+L KFK42944.1 98 DSMNILRNLIPIP---IPIKKDRASIVKYAIEYIKEL 131 67889*******9...7888999************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.9E-4 | 39 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.16E-6 | 98 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-5 | 98 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.47E-4 | 98 | 136 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 241 aa Download sequence Send to blast |
MSLLKSAYHR TDFMEEIRIT VGESDFPPAK MQPPVLVTRS RFADWMNVLR NLIPNLIKVT 60 IYILTSLTKK TVPESNFPPA EMQPRVLVVT RSLGLFADSM NILRNLIPIP IPIKKDRASI 120 VKYAIEYIKE LLRAIEEIKV LVERKKVHRK SDLAEFDVQI VKDEVTIKIE QKKKDINCLL 180 FVSKVIDQLQ LELYHVAGEE HKFLFKAKIC EGTRVHANVI ADTIVEVVEK EYMDALWTQL 240 G |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KFK42944.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002892324.1 | 6e-44 | transcription factor bHLH89 | ||||
Refseq | XP_020870756.1 | 6e-44 | transcription factor bHLH89 | ||||
Swissprot | Q9LND0 | 2e-42 | BH089_ARATH; Transcription factor bHLH89 | ||||
TrEMBL | A0A087HLE2 | 1e-175 | A0A087HLE2_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HLE2 | 1e-175 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1355 | 26 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G06170.2 | 1e-41 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|