PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK42914.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 358aa    MW: 38302.7 Da    PI: 7.8559
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK42914.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-10290335655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR ri  ++ +L++l+P+     +k  s +++L +Av++Ik Lq
  KFK42914.1 290 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 335
                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.656284334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-14287347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.51E-11288339No hitNo description
Gene3DG3DSA:4.10.280.102.2E-13289347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-8290335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-12290340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MYQSSSSTSS SSQRSSLPGG GGGGGGGLIR YGSAPGSLLN SMVDEVIGGS NTRDFTGTVN  60
YPPPPPQDSF LGHFFTGADS SSLRSDSTTC GVNSSDGQKP LDRSYGGFNE ISQQHKSNNL  120
GAVGGNSSGG SYSLARQRSS PADFFSYLSG EKNSFSLNQP TSEYNNQQGG TNAGRGQSRL  180
KSQLSFTSHD PLSRISEVNE TSVHDGSGHS FSAASFGAAT DSWDDGSGSI GFTVTRPNKR  240
SKDIESGLFS QYSLPSDTSM NYMDNYMQLP EDSVPCKIRA KRGCATHPRS IAERERRTRI  300
SGKLKKLQDL VPNMDKQTSY SDMLDLAVQH IKGLQHQLQN LKKEQENCTC GCSTERPS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK42914.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3175490.0KF317549.1 Brassica oleracea var. capitata PA1 (PA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013666654.10.0transcription factor bHLH128
SwissprotQ8H1020.0BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A087HLB20.0A0A087HLB2_ARAAL; Uncharacterized protein
STRINGA0A087HLB20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117772631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-177bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]