PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK42882.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB_related
Protein Properties Length: 600aa    MW: 67144.2 Da    PI: 9.7171
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK42882.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.59.8e-114191248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48
                     + W t+E++ll +avk++G ++W+++++++     ++ ++ +c+ ++q+++
       KFK42882.1 41 QVWGTWEELLLTCAVKRHGFKDWDSVSKEVIsrssLNTSAGNCRIKYQDLK 91
                     68**********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.0E-53993IPR001005SANT/Myb domain
SuperFamilySSF466891.71E-54090IPR009057Homeodomain-like
PfamPF002491.9E-94191IPR001005SANT/Myb domain
CDDcd001675.47E-54391No hitNo description
SMARTSM002976.2E-16265374IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.0E-17268397IPR001487Bromodomain
CDDcd043691.57E-16271369No hitNo description
SuperFamilySSF473706.15E-17272374IPR001487Bromodomain
PfamPF004391.4E-11279356IPR001487Bromodomain
PROSITE profilePS5001412.375284347IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MLNEQEEANG MNNVDNDNNI IYSTSDDDSD NNRIGEEDCN QVWGTWEELL LTCAVKRHGF  60
KDWDSVSKEV ISRSSLNTSA GNCRIKYQDL KQRFDSGNNE STTAEAAEEE ITWLEKLRSL  120
RVEELRRDVQ RCDDSILYGG VSISPPLDLI KKLEEEKNED DDDGDDKKPD LEVHDETKPV  180
RLNRETTDSN RENRSMNESN STGSDHDKTV TDPDPVNTVS RRSEMSNSGE LGESGTSIGY  240
GKRKRTKYRS GEDSGDHGGS GGDVNVKSAG DKSQPLIDII KLIRSHPRGS VFESRLRSQE  300
NKDYKSLIRQ HLDIKTIEKK LKKGSYVSSS LSFYRDLKLL FTNAIVFFPI SSSESTAAHE  360
LRTIISNEMK NQTGKSDHSI IKAEAESSVS RLKSSVLPLV ACKKKSSVSK KTSPSSSLKQ  420
KDEKKSEEVS EEKTVTTTTT TSNVAARSSR RTSNVVAKDT KTGRGKNSNN NKKQTDSKTE  480
SSNDDEDKEE VPKTEKKIAS DKKKSVADFL KRIKKNSPQK AKEATSKDQK TKKSEGNVKK  540
EAKPRELRSN STGKKKAEVE NTSKRKQPKK EAEEVTAATG KRGRESGKEV KQQPKKRSRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK42882.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012776.10.0uncharacterized protein LOC18020113
TrEMBLA0A087HL800.0A0A087HL80_ARAAL; Uncharacterized protein
STRINGA0A087HL800.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.10.0DNA-binding bromodomain-containing protein