PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KFK42724.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 159aa MW: 17443.8 Da PI: 8.2057 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.6e-19 | 5 | 54 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeI+ p++ ++r++lg+f+taeeAa+a++ a+++++g KFK42724.1 5 RYRGVRKRP-WGKYAAEIHPPRN---KRRVWLGTFDTAEEAARAYDSAAREFRG 54 6********.********99843...5************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.4E-14 | 5 | 54 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-31 | 5 | 63 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.50E-30 | 5 | 62 | No hit | No description |
SuperFamily | SSF54171 | 2.22E-22 | 5 | 63 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.907 | 5 | 62 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.7E-36 | 5 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-12 | 6 | 17 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-12 | 28 | 44 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 159 aa Download sequence Send to blast |
MEEVRYRGVR KRPWGKYAAE IHPPRNKRRV WLGTFDTAEE AARAYDSAAR EFRGSKAITN 60 FPLTEDGGNA SATARKGTFP CSGVLSTAVG EIFSYPMHAT ALREELVRGC PVQFEPIALG 120 LSLGLGTAVE VDREASSVVD YKLRRELNLD LSLGPSVDV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-22 | 2 | 62 | 11 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00124 | DAP | Transfer from AT1G03800 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KFK42724.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013639092.1 | 6e-62 | PREDICTED: ethylene-responsive transcription factor 9-like | ||||
Refseq | XP_013694210.1 | 6e-62 | ethylene-responsive transcription factor 9 | ||||
Swissprot | Q9ZWA2 | 4e-46 | ERF77_ARATH; Ethylene-responsive transcription factor 10 | ||||
TrEMBL | A0A087HKS2 | 1e-112 | A0A087HKS2_ARAAL; Ethylene-responsive transcription factor | ||||
STRING | A0A087HKS2 | 1e-113 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G03800.1 | 3e-39 | ERF domain protein 10 |
Publications ? help Back to Top | |||
---|---|---|---|
|