PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK42547.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | NAC | ||||||||
Protein Properties | Length: 296aa MW: 33584.3 Da PI: 7.0307 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167 | 6.4e-52 | 6 | 130 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeelv++yL++k++++++ + +i+e+d+yk++Pw+Lp + +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg dk++ + KFK42547.1 6 LPPGFRFHPTDEELVMHYLCRKCASQSIAV-PIIAEIDLYKYDPWELPGLALYGEKEWYFFSPRDRKYPNGSRPNRSAGSGYWKATGADKPIGL--PKP 101 79*************************999.88***************6555679*************************************99..789 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfy g+apkgekt+W+mheyrl KFK42547.1 102 VGIKKALVFYAGKAPKGEKTNWIMHEYRL 130 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.06E-61 | 3 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.287 | 6 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-27 | 7 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MSELQLPPGF RFHPTDEELV MHYLCRKCAS QSIAVPIIAE IDLYKYDPWE LPGLALYGEK 60 EWYFFSPRDR KYPNGSRPNR SAGSGYWKAT GADKPIGLPK PVGIKKALVF YAGKAPKGEK 120 TNWIMHEYRL ADVDRSVRKK KNSLRLDDWV LCRIYNKKGA IEKRVPPPPV VYGGVADEVM 180 EEKPKLLTEM VMPPPQKQTA TGNDFVYFDN SDSVPKLHTT ESSCSEHVVS PEFTSEVQSE 240 PKWKDWSSAA ATVIDNSTLD FGFNYLDATV DNNAFGGGSN QMFPLQDMFM YMQKPY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-80 | 2 | 163 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK42547.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006418449.1 | 0.0 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 0.0 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A087HK95 | 0.0 | A0A087HK95_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HK95 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 0.0 | NAC family protein |