PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK42538.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 219aa MW: 25313.1 Da PI: 10.2555 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.6 | 3.3e-14 | 31 | 75 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky KFK42538.1 31 RENWTEQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 75 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.22E-17 | 25 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.507 | 26 | 80 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-7 | 29 | 81 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.2E-18 | 29 | 78 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.9E-11 | 30 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-12 | 31 | 75 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.37E-9 | 33 | 76 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MIPVSTQSNT MSFFEDPTKK IRKPYTITKS RENWTEQEHD KFLEALHLFD RDWKKIEAFV 60 GSKTVIQIRS HAQKYFLKVQ KNGTNEHLPP PRPKRKATHP YPQKASKSVA LTSSNALLEH 120 EYLFSTDSKP VISTPNHGLM RRDVTTPKSV IKVMPNFAEV YSFIGSVFDP QTTGHVQRLK 180 QMDPINIETV LLLMRNLCVN LISPEFEEQR RLISSYNAK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK42538.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009119702.1 | 1e-136 | PREDICTED: protein REVEILLE 3 | ||||
Refseq | XP_013666318.1 | 1e-136 | protein REVEILLE 3-like | ||||
Refseq | XP_022548702.1 | 1e-136 | protein REVEILLE 3-like | ||||
Swissprot | Q6R0H0 | 1e-122 | RVE3_ARATH; Protein REVEILLE 3 | ||||
TrEMBL | A0A087HK86 | 1e-162 | A0A087HK86_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HK86 | 1e-163 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1290 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01520.1 | 1e-124 | MYB_related family protein |
Publications ? help Back to Top | |||
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