PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK42400.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

FAR1

Protein Properties

Length: 706aa MW: 80449.5 Da PI: 5.3458

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK42400.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.6	1.8e-22	99	181	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +Yn+YA+e+GF +r+++s ++++++e + ++C++eg++ ++ + ++r+etrtgC+a++++++ + ++w+v++++l+HnH++ KFK42400.1 99 YYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKMVKEAN-----SRRKETRTGCQAMIRLRLIEFDRWKVDQVKLDHNHSF 181 9*************************************998877.....8999*****************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.8E-20	99	181	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-25	302	395	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.691	585	624	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.1E-5	594	621	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.1E-4	599	626	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 706 aa Download sequence Send to blast
MIGDSVYPPA DDDDDDHSLS PNPNLCITIE DGSLSSDHLV TDDLETDLDL ENDCDGLLDI 60 DESNLHEETD TFAADSQGNC LLPPATGMEF DSYDDAYSYY NSYARELGFA IRVKSSWTKR 120 NSKEKRGAVL CCNCEGFKMV KEANSRRKET RTGCQAMIRL RLIEFDRWKV DQVKLDHNHS 180 FDLQRAQNSK SHKKTIKRKL EPSLDVQVRT IKLYRTLAVD TPGHGTSNSS GETSDPTHDD 240 SRCARRLELR GGFRVLQDFF FQVQLTNPNF VYLMDLSDDG SLRNVFWIDA RARAAYSHFG 300 DVVVFDTTCL SNAYELPLVA FVGINHHGDS ILLGSALVAD QSCETYVWLL RAWLTCMLGR 360 PPQTFVTEQC KAMQTAVSEV FPRAHHRLSL THVLQTIFQS VVGLQDSESF RMALNRVVYG 420 FLKVEEFEVA WEEMVIRFGL TSDETIRGLF QDREQWAPVY LKDTFLAGAL TFQLGNAAAP 480 FIFSGYVHQH TSLREFLEGY ESFLDKKYTS EALCDSESSK SIPELKTTHP YESQMANVFT 540 KEIFRRFQEE VSAMSLCLGV TQVHSNGATS SYMVKEREGE KVREFEVIYE PSAASQARCF 600 CMCGGFSFNG YQCRHVLLLL SNNGLEEVPS QYILQRWRKD VKRLYVADFG SGRVDMMNPD 660 QWYEHLHRRA MQVVEQGMRS KEHCRVAWEA FKESVNKVHL ATDNPS

Sequence ? help Back to Top

Protein Sequence Length: 706 aa Download sequence Send to blast

MIGDSVYPPA DDDDDDHSLS PNPNLCITIE DGSLSSDHLV TDDLETDLDL ENDCDGLLDI  60
DESNLHEETD TFAADSQGNC LLPPATGMEF DSYDDAYSYY NSYARELGFA IRVKSSWTKR  120
NSKEKRGAVL CCNCEGFKMV KEANSRRKET RTGCQAMIRL RLIEFDRWKV DQVKLDHNHS  180
FDLQRAQNSK SHKKTIKRKL EPSLDVQVRT IKLYRTLAVD TPGHGTSNSS GETSDPTHDD  240
SRCARRLELR GGFRVLQDFF FQVQLTNPNF VYLMDLSDDG SLRNVFWIDA RARAAYSHFG  300
DVVVFDTTCL SNAYELPLVA FVGINHHGDS ILLGSALVAD QSCETYVWLL RAWLTCMLGR  360
PPQTFVTEQC KAMQTAVSEV FPRAHHRLSL THVLQTIFQS VVGLQDSESF RMALNRVVYG  420
FLKVEEFEVA WEEMVIRFGL TSDETIRGLF QDREQWAPVY LKDTFLAGAL TFQLGNAAAP  480
FIFSGYVHQH TSLREFLEGY ESFLDKKYTS EALCDSESSK SIPELKTTHP YESQMANVFT  540
KEIFRRFQEE VSAMSLCLGV TQVHSNGATS SYMVKEREGE KVREFEVIYE PSAASQARCF  600
CMCGGFSFNG YQCRHVLLLL SNNGLEEVPS QYILQRWRKD VKRLYVADFG SGRVDMMNPD  660
QWYEHLHRRA MQVVEQGMRS KEHCRVAWEA FKESVNKVHL ATDNPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	192	199	KKTIKRKL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK42400.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006389743.1	0.0	protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A087HJU8	0.0	A0A087HJU8_ARAAL; Uncharacterized protein
STRING	A0A087HJU8	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14233	20	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]