PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK42252.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | BES1 | ||||||||
Protein Properties | Length: 317aa MW: 34216 Da PI: 8.1952 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 205.5 | 1.5e-63 | 2 | 145 | 1 | 149 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspesslqssl 98 ++++r+pt +ErEnnkrRERrRRaiaaki++GLR++Gny+lpk++DnneVlkALc+eAGw+ve DGttyrkgs+++ e++e ++ sa+asp+ss+q KFK42252.1 2 TSGTRMPTYRERENNKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIVELDGTTYRKGSSRPiERMELGNGSATASPCSSYQ--- 97 5899*********************************************************************9999*******************... PP DUF822 99 kssalaspvesysaspksssfpspssldsislasa..asllpvlsvlslvsss 149 +sp++sy++sp ss+f+sp+s+++++l+s +sl+p+l++ls++sss KFK42252.1 98 -----PSPCASYNPSPGSSNFMSPNSSSFANLTSGdgQSLIPWLKHLSTTSSS 145 .....**********************9999998788**********997776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 2.5E-60 | 3 | 140 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MTSGTRMPTY RERENNKRRE RRRRAIAAKI FTGLRMYGNY ELPKHCDNNE VLKALCNEAG 60 WIVELDGTTY RKGSSRPIER MELGNGSATA SPCSSYQPSP CASYNPSPGS SNFMSPNSSS 120 FANLTSGDGQ SLIPWLKHLS TTSSSSASSS SRLPNYLYIP GGSISAPVTP PLSSPTARTP 180 RMNNDWQQLN NSFFVSSTPP SPTRQIIPDS EWFSGIQLAQ SVPASPTFSL VSQKPFGFKD 240 EVASAGGSRM WTPGQSGTCS PALPTGDVPM SEAVVAPPEF AFGSNINGLV KAWEGERIHE 300 ESGSDDLELT LGNSSTR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 3e-20 | 6 | 73 | 372 | 439 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 3e-20 | 6 | 73 | 372 | 439 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 3e-20 | 6 | 73 | 372 | 439 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 3e-20 | 6 | 73 | 372 | 439 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00248 | DAP | Transfer from AT1G78700 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK42252.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY050430 | 1e-42 | AY050430.1 Arabidopsis thaliana At1g78700/F9K20_26 mRNA, complete cds. | |||
GenBank | AY090331 | 1e-42 | AY090331.1 Arabidopsis thaliana At1g78700/F9K20_26 mRNA, complete cds. | |||
GenBank | CP002684 | 1e-42 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F9K20 | 1e-42 | AC005679.1 Arabidopsis thaliana chromosome 1 BAC F9K20 sequence, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_565187.1 | 0.0 | BES1/BZR1 homolog 4 | ||||
Swissprot | Q9ZV88 | 0.0 | BEH4_ARATH; BES1/BZR1 homolog protein 4 | ||||
TrEMBL | A0A087HJF0 | 0.0 | A0A087HJF0_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HJF0 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1917 | 27 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78700.1 | 1e-167 | BES1/BZR1 homolog 4 |