PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK42233.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family DBB
Protein Properties Length: 293aa    MW: 32038.8 Da    PI: 5.6056
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK42233.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.93.6e-07447542
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                 C+ +e+ e++  C  ++  lC  C +++H        H++vpl
  KFK42233.1  4 QCNVCEKAEATVLCCADEAALCFACDEKIHAAnklagkHQRVPL 47
                7*****************************66899999999986 PP
2zf-B_box25.92e-085490337
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
                 +kC+ ++e    +fC +++ llC++C +++H+   H
  KFK42233.1 54 IPKCDICQEASGFFFCLQDRALLCRKCDVAIHSVnpH 90
                689*******9********************943563 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.296147IPR000315B-box-type zinc finger
CDDcd000214.24E-7347No hitNo description
SMARTSM003362.8E-9447IPR000315B-box-type zinc finger
PfamPF006434.2E-5447IPR000315B-box-type zinc finger
SMARTSM003362.6E-135299IPR000315B-box-type zinc finger
PROSITE profilePS501198.7595299IPR000315B-box-type zinc finger
CDDcd000214.77E-95599No hitNo description
PfamPF006431.4E-65590IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MKIQCNVCEK AEATVLCCAD EAALCFACDE KIHAANKLAG KHQRVPLSVS SSSIPKCDIC  60
QEASGFFFCL QDRALLCRKC DVAIHSVNPH VSAHQRFLLT GIRVGNESTD AGPSSKSSLV  120
SNDDDKSAME MEIKSFALPT SEPQKMDFQL GVLPESKVSD HISMKLPFAS SGSATGSIPQ  180
WQIEEIFGLT DFDQSYEYME NNGSSKADTS RRGDSDSSSM MRSSEEDAED YQNCLGGETS  240
WAVPQINSPP TASGLNWPKH FNNHSVYVPD ISSSTPYTGS SPNQKIGKRR RRF
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK42233.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526341e-124AK352634.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-M18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020890470.11e-177B-box zinc finger protein 22
SwissprotQ9SYM21e-166BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A087HJD10.0A0A087HJD1_ARAAL; Uncharacterized protein
STRINGA0A087HJD10.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56062849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-165light-regulated zinc finger protein 1