PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK42197.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 504aa    MW: 57064.4 Da    PI: 9.3901
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK42197.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.6e-11347392555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h + Er+RR+++N++f+ L++llP+      +K +Ka++L  A e ++sLq
  KFK42197.1 347 HMISERKRREKLNESFQALKSLLPPG-----TKKDKASVLAIAREQLNSLQ 392
                 8899********************97.....8*************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-15340407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.577342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.90E-11344396No hitNo description
Gene3DG3DSA:4.10.280.108.3E-14346410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-9347392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-13348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MDAIFLTDDP NTRKHLIESL AQAFGSLYVC LWSYYFPRPS NYLISLDGYY NGASEESSTS  60
GSLARGLFHE YRQSVIPLRN GHVPSMAFMN NVPYVEIRPQ DIQRLCYNDA QRLFYQEARI  120
QTVIFMGCRS GEIELGLTYD ATNMKLEANL QEWFPENFSR KSSSPVNSNY LRPPPPPSSS  180
SSSLRSLDSP QNVSEYSSLS FPLIPKPSTT TNVSLHQPSN MIHPHQQQQQ QQQDSLFRNR  240
SEEEALTQAI LAVLSAPPPS CPPSTSSSPQ LKRRTTAFKK YYCVLGGQAP QLSVGKQSVM  300
KRAISFYNRL NNYRRERFAR ENATIGDGSG GNGGRYNSGP SATQLHHMIS ERKRREKLNE  360
SFQALKSLLP PGTKKDKASV LAIAREQLNS LQGEVSKLLE RTRELEAKLA GEREMENDLR  420
PDERFNVRIR QIPESTSRER FVDLRVVVRG DNIRVDDLMI SLLEFLKKIN NVSLVSVEAR  480
TRTWEDGDTS VVLVSLRLKI EVNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350355ERKRRE
2351356RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK42197.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001330357.10.0basic helix-loop-helix (bHLH) DNA-binding family protein
SwissprotQ9LTS40.0BH041_ARATH; Putative transcription factor bHLH041
TrEMBLA0A087HJ950.0A0A087HJ95_ARAAL; Uncharacterized protein
STRINGA0A087HJ950.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-177bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]