PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK42183.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MIKC_MADS
Protein Properties Length: 324aa    MW: 36991 Da    PI: 4.7166
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK42183.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.52.7e-26958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien++nrqvtfskRrng++KKA+ELS+LCd+++a+++fs++++l  +s
  KFK42183.1  9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALLMFSPSDRLSLFS 58
                79******************************************998776 PP
2K-box23.91.7e-09120199988
       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                 + +++ e+l+qe+ kL+ ++++ ++e+R++  + +   s++e +  e+qL + l+++ ++++++l +q++       ++q
  KFK42183.1 120 AINSDVEELEQEVYKLQHQLHMAEEELRKYEPDPIRFTSIEEYETCEKQLIETLTRVTQRREHILSDQLSSYEASAIQQQ 199
                 5577899*************************************************************998776665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.9E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.805161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-28283IPR002100Transcription factor, MADS-box
CDDcd002658.47E-34275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-24323IPR002100Transcription factor, MADS-box
PfamPF003193.9E-241055IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-243859IPR002100Transcription factor, MADS-box
PfamPF014865.8E-6124194IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALLMFSP SDRLSLFSGK  60
TRIEDVFTRF INLPDQEREN APYPDHSRRS DFQSKEYLLR TLQQLKAEND IALQLTNPAA  120
INSDVEELEQ EVYKLQHQLH MAEEELRKYE PDPIRFTSIE EYETCEKQLI ETLTRVTQRR  180
EHILSDQLSS YEASAIQQQQ NIGGPFVNDV VGGWLTENGP SQAHLYDPVA HSAMYETLLQ  240
GSSSSSNQNN NNMGECHVSN PNGDMFQEWA QAYNSTTGPN PSGLFPPMQH QNQHGVVGPN  300
MEESAQADHE VSDYDIRMPQ LSSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-15180181Myocyte-specific enhancer factor 2B
1tqe_Q2e-15180181Myocyte-specific enhancer factor 2B
1tqe_R2e-15180181Myocyte-specific enhancer factor 2B
1tqe_S2e-15180181Myocyte-specific enhancer factor 2B
3mu6_A1e-15270168Myocyte-specific enhancer factor 2A
3mu6_B1e-15270168Myocyte-specific enhancer factor 2A
3mu6_C1e-15270168Myocyte-specific enhancer factor 2A
3mu6_D1e-15270168Myocyte-specific enhancer factor 2A
5f28_A2e-15181182MEF2C
5f28_B2e-15181182MEF2C
5f28_C2e-15181182MEF2C
5f28_D2e-15181182MEF2C
6c9l_A2e-15180181Myocyte-specific enhancer factor 2B
6c9l_B2e-15180181Myocyte-specific enhancer factor 2B
6c9l_C2e-15180181Myocyte-specific enhancer factor 2B
6c9l_D2e-15180181Myocyte-specific enhancer factor 2B
6c9l_E2e-15180181Myocyte-specific enhancer factor 2B
6c9l_F2e-15180181Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK42183.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4464410.0DQ446441.1 Arabidopsis thaliana clone pENTR221-At1g77980 MADS-box family protein (At1g77980) mRNA, complete cds.
GenBankDQ6529400.0DQ652940.1 Arabidopsis thaliana clone 0000013056_0000009401 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390037.10.0agamous-like MADS-box protein AGL66
SwissprotQ1PFC20.0AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLA0A087HJ810.0A0A087HJ81_ARAAL; Uncharacterized protein
STRINGA0A087HJ810.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.10.0AGAMOUS-like 66
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]