PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK42158.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | ARF | ||||||||
Protein Properties | Length: 1146aa MW: 126733 Da PI: 6.8353 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.4 | 5.5e-23 | 115 | 216 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae++ +++++++ +l+ +d + ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F + + +++l+ KFK42158.1 115 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldfSMQPPCQ-ELVAKDIHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIR--DGKAQLL 210 99*****************************98888885.9************************************************5..4678889 PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ KFK42158.1 211 LGIRRA 216 999997 PP | |||||||
2 | Auxin_resp | 116 | 3.3e-38 | 241 | 323 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F+++YnPra+++eFvv+++k+ ka++ +vs+GmRf+m fete++ rr++Gtv+g+sdldpvrW+ S+Wr+L+ KFK42158.1 241 AAHANANNSPFTIFYNPRAAPAEFVVPLAKYTKAMYAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKSSQWRNLQ 323 799******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.44E-42 | 105 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-41 | 109 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.04E-19 | 114 | 215 | No hit | No description |
SMART | SM01019 | 9.7E-23 | 115 | 217 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-21 | 115 | 216 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.125 | 115 | 217 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.6E-33 | 241 | 323 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.3E-9 | 1016 | 1105 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.956 | 1019 | 1112 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.13E-8 | 1032 | 1097 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009638 | Biological Process | phototropism | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009785 | Biological Process | blue light signaling pathway | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1146 aa Download sequence Send to blast |
MCAGDRRNIN SELWHACAGP LISLPPAGSL VVYFPQGHSE QVAASMQKQT DFIPSYPNLP 60 SKLICMLHNV TLNADPETDE VYAQMTLQPV NKYDRDALLA SDMGLKLNRQ PNEFFCKTLT 120 ASDTSTHGGF SVPRRAAEKI FPALDFSMQP PCQELVAKDI HDNTWTFRHI YRGQPKRHLL 180 TTGWSVFVST KRLFAGDSVL FIRDGKAQLL LGIRRANRQQ PALSSSVISS DSMHIGVLAA 240 AAHANANNSP FTIFYNPRAA PAEFVVPLAK YTKAMYAQVS LGMRFRMIFE TEECGVRRYM 300 GTVTGISDLD PVRWKSSQWR NLQIGWDESA AGDRPSRVSV WDIEPVLTPF YICPPPFFRP 360 RFSGQPGMPD DESDMESALK RAMPWLDNSF EMKDSSSTIF PGLSLVQWMN MQQQNGQMPA 420 GAAAQPGFFP SMLSPTAGMH NNLGGTDDPS KLLSFQTPQG GISSSNLQFN KPNQQGPMSQ 480 LPQPPTTLSQ QQQLQQLLHS SLNQQQQQQQ TQSQQQQQQQ QQQSLQQHHQ QALQQQHQQA 540 LQQQTQQQQL RTQPVQSQSQ PQTQPQQLQP QKLQQPQLPQ NQLYNGQQAA PQLQAQQASM 600 HHLQPQLVSG SMASSVIVPP SNSLNQSFQQ QQQSKQHHQG HHHLGASTSQ SSLIETSKSS 660 SNPMSMTAQD TQFPRQVEQQ QPPGLVKGHN QQTLLQQKAH QPQSQSQTQV QQMYQQSLLE 720 QPHLQFQLLQ RLQQQQQPQQ QFLSPGSSML QSQLLHQQLQ SQQMQQLPPL SQSQQFPSSC 780 TNNGLSTLQP PQMLVNRPQD KQNQTVGGGV RAYSGITDGG DAPSSSTSPS TNNCQISSSG 840 FLNRSQSGPA ILIPDVAADM SGNLVQDLYS KSDTRLKPDL VCQQKSKATL TDHQLEPSAS 900 GTSFGLDGGD NNRQQNFLAP SFGLDSDSRN SLLGGANVDN SFVPDTLLSR GYDSQKDLQN 960 MLSNYGGVTN DIGTEMSTSA VRTQSFGIPN VPAISNDVAV NDAGVLGGGL WAAQAQRMRT 1020 YTKVQKRGSV GRSIDVNRYR GYDELRHDLA RMFGIEGQLE DPQTSDWKLV YVDHENDILL 1080 VGDDPWEEFV NCVQSIKILS SAEVQQMSLD GNFAGLPVTN QACSGGDSGN AWRGHYDDNS 1140 ATSFNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-168 | 9 | 344 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK42158.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF042195 | 0.0 | AF042195.1 Arabidopsis thaliana auxin response factor 7 (ARF7) mRNA, complete cds. | |||
GenBank | AY669789 | 0.0 | AY669789.1 Arabidopsis thaliana clone C105344 ARF7 (At5g20730) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006400643.2 | 0.0 | auxin response factor 7 isoform X1 | ||||
TrEMBL | A0A087HJ56 | 0.0 | A0A087HJ56_ARAAL; Auxin response factor | ||||
STRING | A0A087HJ56 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2629 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20730.2 | 0.0 | ARF family protein |