PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK42054.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family FAR1
Protein Properties Length: 732aa    MW: 84794.7 Da    PI: 6.9864
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK42054.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.49.1e-271297291
        FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                fY++YAk++GF + k +s++s+ ++e+++++f C ++g++++++++     ++ra+ ++gCka+++vk+++dgkw+v+++++eHnHel p
  KFK42054.1 12 FYKDYAKSIGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDA----INPRASPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLP 97
                9****************************************99887....9************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-241297IPR004330FAR1 DNA binding domain
PfamPF105512.9E-28213305IPR018289MULE transposase domain
PfamPF044343.1E-10491525IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.868491527IPR007527Zinc finger, SWIM-type
SMARTSM005753.4E-8502529IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MEFETHEDAY LFYKDYAKSI GFGTAKLSSR RSRASKEFID AKFSCIRYGS KQQSDDAINP  60
RASPKIGCKA SMHVKRRQDG KWYVYSFVKE HNHELLPEQA HFFRSHRENN TEFVKSDSRF  120
RKKKNNHVSG SKHLSAYHDL SFLDGFMRNQ HDKGRRLAID NCDVEILLEF FTRMQEENCK  180
FFYAVDFSED HVLRNVFWVD AKGVEDYKSF SDVVSFDTTY FVSKYRIPLV VFVGVNHHEQ  240
PVLLGCGLVA DDTVYSYVWL MQSWLVAMGG LMPKVMLTDQ NTAIKAAIAA VLPETRHCYC  300
LWHVLDRLPR NLDYWSMWQD TFMKKLFKCI YKSWSEEEFD RRWLKLIDKF HLRDVQWMRS  360
LYEERKFWAP TFMRGVTFAG LSTRNRSESV NSLFDRYIQA ETSLKEFLEG YGIMLEDRYE  420
EEAKADFDAW HEAPEFKSPS PFEKQMLLVY THEIFRKFQL EVLGAAACHL TKESEEGTTY  480
SVKDFEDDQK YLVDWDESNS DIYCSCRSFE YKGYLCRHAI VVLQMSGVFT IPINYVLQRW  540
TNAARNRHQI SGNLEVVQSN IHRFNDLCRR AIILGEEGSL SQESYDIAMF AMKEAFKQCA  600
IKVNTIEYPA MCEEAATQPG DSVQEGSQYG STSKQIGLEP NIHAGNAPGQ AETRRDKRSS  660
LNNASKRAKQ VTQSGTVGEG SQEGYQQAAP RPVQAVMAGQ FHNTMVGVFQ NVIPTEFHNI  720
QTTNMHQNNP PG
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK42054.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020890971.10.0protein FAR1-RELATED SEQUENCE 4 isoform X1
RefseqXP_020890972.10.0protein FAR1-RELATED SEQUENCE 4 isoform X1
SwissprotQ6NQJ70.0FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLA0A087HIV20.0A0A087HIV2_ARAAL; Uncharacterized protein
STRINGA0A087HIV30.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.10.0FAR1-related sequence 4
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]