PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK42002.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 460aa    MW: 50064.9 Da    PI: 9.631
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK42002.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-05207229223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  C+ Cg++F+  ++L+ H+ + H
  KFK42002.1 207 ACSQCGEVFPKLESLELHQAVrH 229
                 6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280206229IPR007087Zinc finger, C2H2
PROSITE profilePS501578.808206234IPR007087Zinc finger, C2H2
SuperFamilySSF563992.78E-21231456No hitNo description
Gene3DG3DSA:3.90.228.109.8E-14233456IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MALLTILPEN AEPPKHTQPP SKRKKRNNTT DQTQPQKPHK SQKPQKEKKA VIQKQPSSWD  60
QIKNLLTCKQ IEGSRVHDPS KNSQPGPSIT THPLSPSKLG SSCSSICSFR DVAHGNTRVV  120
HRADHSPEVA KSVTTPDSET RLLTRKPGQH GSSTSSRSLI SGSTRSNYTS SSTTSFRAMQ  180
FRKLSGCYEC HMIVDPSRYP ISPRVCACSQ CGEVFPKLES LELHQAVRHA VSELGPEDSG  240
RNIVEIIFKS SWLKKDSPIC NIERILKVHN TQRTIQRFED CRDAVKARAL QTTRKDARCA  300
ADGNELLRFH CTTLTCSLGS RGGSSLCSNL PGCGVCTVIR HGFQGKSCAG GGGTASVSSG  360
VRTTASSGRA DDLLRCNDDA RRVMLVCRVI AGRVKRVDLP PVDSTVTEKK SPAEEGLSSG  420
GVFDSVAVNA GVYSNLEELV VYNARAILPC FVVIYKVLES
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK42002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428604.10.0PREDICTED: uncharacterized protein LOC104713223
TrEMBLA0A087HIQ00.0A0A087HIQ0_ARAAL; Uncharacterized protein
STRINGA0A087HIQ00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.10.0C2H2-like zinc finger protein