PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41979.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family TALE
Protein Properties Length: 285aa    MW: 32538 Da    PI: 6.1721
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41979.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.94.5e-102162541854
                 HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 lF+   ++yp+ +e+  LA+++gL+++qV++WF N R +
  KFK41979.1 216 LFQHflHPYPNDTEKLMLASQTGLSKNQVSNWFINARVR 254
                 5775569******************************98 PP
2BELL100.31.4e-3278149172
        BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 e++el++k++kLlsll++V++r+  y++ql++ i sFe++ag gs+k+Yt lAl+a++rhF cL++ai++q+
  KFK41979.1  78 ENHELHIKITKLLSLLQQVEERFDIYCNQLEQAITSFEEIAGEGSSKLYTGLALQAMTRHFGCLQEAIISQL 149
                 689******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.5E-118147IPR006563POX domain
PfamPF075269.9E-2718145IPR006563POX domain
SMARTSM003892.5E-9198262IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.9E-28203264IPR009057Homeodomain-like
CDDcd000867.32E-11204259No hitNo description
SuperFamilySSF466894.71E-18204267IPR009057Homeodomain-like
PfamPF059201.7E-17215254IPR008422Homeobox KN domain
PROSITE profilePS5007111.791217258IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDEFRASHEC SSISLDPRYV KAVRCLVEEV INIGGREVEL CNDILIQQLF PGRRRSGFGL  60
SSEIKSELCN SGFMSLPENH ELHIKITKLL SLLQQVEERF DIYCNQLEQA ITSFEEIAGE  120
GSSKLYTGLA LQAMTRHFGC LQEAIISQLN SLRRRFIISQ DVPKIISSGL SQLSLFDRNS  180
SSSLQRLGLV QGPQRHAWKP IRGLPETSVA ILRAWLFQHF LHPYPNDTEK LMLASQTGLS  240
KNQVSNWFIN ARVRLWKPMI EEMYREEFGD SSDESMQREA NDDSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-17204265566Homeobox protein Meis2
3k2a_B2e-17204265566Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41979.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4464320.0DQ446432.1 Arabidopsis thaliana clone pENTR221-At1g75430 homeodomain-containing protein (At1g75430) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301007.10.0BEL1-like homeodomain protein 11
SwissprotQ1PFD10.0BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A087HIM70.0A0A087HIM7_ARAAL; Uncharacterized protein
STRINGA0A087HIM70.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97362734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.10.0BEL1-like homeodomain 11