PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK41777.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 726aa MW: 79695.7 Da PI: 6.6434 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.7 | 1.1e-19 | 29 | 84 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le+ F+++++p+ ++r +L+++lgL rq+k+WFqNrR++ k KFK41777.1 29 KKRYHRHTAQQIQRLESSFKECPHPDDKQRNQLSRELGLAPRQIKFWFQNRRTQLK 84 688999**********************************************9877 PP | |||||||
2 | START | 154.1 | 1.2e-48 | 234 | 454 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 +a++a++el+++ +ep+W++ +++n + f++s + ++ea+r sg+v+m+++ lv ++d +W e ++ + +tl+viss KFK41777.1 234 IALTAMEELLRLLHTNEPLWTRTDgsrDILNLGSYENLFPRSSNrgknhnLRIEASRSSGIVFMNAMALVDMFMDCV-KWGELFPsiiaASKTLAVISS 331 7899******************9999999999999999999888999999***************************.*******9999********** PP T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS.XXH CS START 88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr.lph 178 g gal+l + e+ +lsplv+ R+f +Ry++q ++g+wv+v vS d +q+++ +s++ R +pSg+li++++ng+skvtwveh++ +++ ++h KFK41777.1 332 GmggtqeGALHLLYEEMELLSPLVAtREFCELRYCQQIEQGSWVVVNVSYDLPQFVS-HSQSYR---FPSGCLIQDMPNGYSKVTWVEHIETEEKeQIH 426 *********************************************************.999999...*************************986266* PP HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 179 wllrslvksglaegaktwvatlqrqcek 206 +l+r ++++g+a+ga +wv tlqr ce+ KFK41777.1 427 ELYREMIHKGIAFGAERWVTTLQRMCER 454 **************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.1E-20 | 8 | 86 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-22 | 14 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.026 | 26 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-18 | 27 | 90 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.2E-17 | 29 | 84 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.05E-19 | 29 | 87 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 61 | 84 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 46.338 | 224 | 457 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.55E-33 | 225 | 456 | No hit | No description |
CDD | cd08875 | 1.25E-100 | 228 | 453 | No hit | No description |
SMART | SM00234 | 8.4E-41 | 233 | 454 | IPR002913 | START domain |
Pfam | PF01852 | 1.7E-41 | 234 | 454 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 4.1E-7 | 286 | 453 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.61E-17 | 476 | 711 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 726 aa Download sequence Send to blast |
MSFVIGSGSG SGGDGGGGHD GGSETDRKKK RYHRHTAQQI QRLESSFKEC PHPDDKQRNQ 60 LSRELGLAPR QIKFWFQNRR TQLKAQHERA DNSALKAEND KIRCENIAIR EALKHAICPN 120 CGGPPVSEDP YFDEQKLRIE NAHLREELER MSTIASKYMG RPISSHLSTL HPMHVSPLDL 180 SMTSLTGCGG HCGQGPSLDF DLLPGSSMAV VPSNLQSQPN LAISDMDKPV MTSIALTAME 240 ELLRLLHTNE PLWTRTDGSR DILNLGSYEN LFPRSSNRGK NHNLRIEASR SSGIVFMNAM 300 ALVDMFMDCV KWGELFPSII AASKTLAVIS SGMGGTQEGA LHLLYEEMEL LSPLVATREF 360 CELRYCQQIE QGSWVVVNVS YDLPQFVSHS QSYRFPSGCL IQDMPNGYSK VTWVEHIETE 420 EKEQIHELYR EMIHKGIAFG AERWVTTLQR MCERFASQLV PATSSRDLGG VIPSTEGKRS 480 MMRLAQRMVS NYCLSVSRSN NTRSTVVTEL NEVGIRVTAH KSPESNSTIL CAATTFWLPN 540 SPQTVFNFLK DERTRPQWDV LSNGNGVQEV AHISNGSHPG NCISVLRATN ASQGNNNMLI 600 LQESSIDTSG ALVVYSPVDL SSVNIAMSGE DPSFIHLLSS GFAISSDENH NSSSTSEQGG 660 ASTSSGRSST SGSLITVGFQ IMVSNLPTAK LNMESVETVN NLIGTTVHQI KTALNNCPNA 720 PSTTTA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK41777.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT003979 | 0.0 | BT003979.1 Arabidopsis thaliana clone RAFL15-10-L20 (R20587) putative homeobox protein (At1g73360) mRNA, complete cds. | |||
GenBank | BT004915 | 0.0 | BT004915.1 Arabidopsis thaliana clone U20587 putative homeobox protein (At1g73360) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020890987.1 | 0.0 | homeobox-leucine zipper protein HDG11 | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A087HI25 | 0.0 | A0A087HI25_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HI25 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3004 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |