PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41696.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB_related
Protein Properties Length: 306aa    MW: 34065.1 Da    PI: 8.6149
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41696.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.18.2e-13556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE++ l+d+++++G+g Wk I r        + R+  ++k++w++ 
       KFK41696.1  5 KLKWTAEEEKALLDGIEKHGSGKWKNILRDPEfthrlTSRSNIDLKDKWRNM 56
                     689***********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.619162IPR017930Myb domain
SuperFamilySSF466895.89E-16358IPR009057Homeodomain-like
SMARTSM007171.5E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-13557IPR009057Homeodomain-like
PfamPF002491.3E-8555IPR001005SANT/Myb domain
CDDcd116603.95E-21757No hitNo description
SuperFamilySSF467851.03E-12131211IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.0E-13132197IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150420.991134208IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.105.3E-10134195IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.1E-7136196IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGNQKLKWTA EEEKALLDGI EKHGSGKWKN ILRDPEFTHR LTSRSNIDLK DKWRNMCVAP  60
GSTQGSNYRP RPIKVKEEAV VSIKVKEEAV VVPGGGDVAI VIPPPNVSPS SELSIDDSSN  120
SLVDNKNILV DNKNAPRYDG MIYEALLTLA DANGSDVGSI FNYIEPRHEV PPNFRRTLSS  180
RLRRMATQGK LLKVSNFKPL QNLYKMPEPS GTKTYVPAPS KPKETINIKF RQSINQPPPV  240
TRVMIEEAGI TAAYKLVEAE NKIDVARGAI EELNKMTKLA EETELLMELA KEMHELCSHG  300
EVVLLA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41696.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008799.11e-123telomere repeat-binding factor 5 isoform X2
SwissprotF4IEY41e-112TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBLA0A087HHU40.0A0A087HHU4_ARAAL; Uncharacterized protein
STRINGA0A087HHU40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.11e-101MYB_related family protein
Publications ? help Back to Top
  1. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]