PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41642.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 320aa    MW: 36274.3 Da    PI: 4.9481
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41642.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.53.3e-15123174155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ ++ Lr+++P++   ++++ + a+i+  A++Y+k+L+
  KFK41642.1 123 QRMTHIAVERNRRKQMNEYLSVLRSIMPPS---YAQRGDQASIVGGAINYLKELE 174
                 79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.26E-13121178No hitNo description
SuperFamilySSF474591.7E-16122182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-13122178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.228122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-12123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-10128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.101244320IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MALEAVVYPQ DPFSYISSKD FPFHDIYFQE EEDQDPQDTK NNIKLGQEQE QGFACINYIG  60
NKSGESDDYN YNDDDLQWPR DNLPYGSAVD TEKQPPPSDV GVVERRKRRR TRSSKNKEEI  120
ENQRMTHIAV ERNRRKQMNE YLSVLRSIMP PSYAQRGDQA SIVGGAINYL KELEHHLQSM  180
EPSPVKTTTV EDGSDQSKTI ATTTSSAPFS DFFAFPQYSS RPSSAAAAEG TAEIEVTMVE  240
SHASLRILVK RRPRQLLKLV ASIQSLRLTL LHLNVTTRDN FVLYSISVKV EEGSQLNTVE  300
DIAAAVNQIL RRIEEESSFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105109RKRRR
2105110RKRRRT
3123134RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41642.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415952.10.0PREDICTED: transcription factor bHLH96-like isoform X2
SwissprotQ9C7T40.0BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A087HHP00.0A0A087HHP0_ARAAL; Uncharacterized protein
STRINGA0A087HHP00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-176bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]