PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KFK41461.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 308aa MW: 35321.7 Da PI: 4.8004 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28 | 3.6e-09 | 251 | 285 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp++ ++ LA+++gL+++q+ +WF N+R ++ KFK41461.1 251 KWPYPTEGDKIALAEETGLDQKQINNWFINQRKRH 285 569*****************************885 PP | |||||||
2 | ELK | 33.7 | 7.9e-12 | 205 | 226 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LK+qLlrK++++++sLk EFs KFK41461.1 205 DLKDQLLRKFGSHISSLKLEFS 226 6********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 7.5E-21 | 64 | 108 | IPR005540 | KNOX1 |
Pfam | PF03790 | 7.5E-20 | 66 | 107 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.3E-27 | 115 | 166 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.3E-25 | 119 | 165 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.935 | 205 | 225 | IPR005539 | ELK domain |
SMART | SM01188 | 4.2E-6 | 205 | 226 | IPR005539 | ELK domain |
Pfam | PF03789 | 7.2E-9 | 205 | 226 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.633 | 225 | 288 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.57E-19 | 226 | 298 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.4E-12 | 227 | 292 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-28 | 230 | 289 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.27E-11 | 234 | 289 | No hit | No description |
Pfam | PF05920 | 9.3E-18 | 245 | 284 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 263 | 286 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0010094 | Biological Process | specification of carpel identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 308 aa Download sequence Send to blast |
MMITSSENLM SPSDFQNLIY SSTGDNNNNR VFGSNELLSA SETASIITPR IRRSHGDDNS 60 FSLGVIKTKI ACHPLYPRLL QTYIDCQKVG APLEIACLLE EIQRENDVYK RDLGPLSCFG 120 ADPELDEFME TYCDILVKYK SDLARPFDEA TTFLNKIEMQ LQNLCTGPPC TRDVSDDGAV 180 SSDEELREGD HVATQDSQQR SEDRDLKDQL LRKFGSHISS LKLEFSKKKK KGKLPREARQ 240 ALLDWWSVHY KWPYPTEGDK IALAEETGLD QKQINNWFIN QRKRHWKPSE NMPFAMMDDS 300 SETFFIEE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KFK41461.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020889993.1 | 1e-174 | homeobox protein knotted-1-like 2 | ||||
Swissprot | P46640 | 1e-175 | KNAT2_ARATH; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | A0A087HH59 | 0.0 | A0A087HH59_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HH59 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM835 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G70510.1 | 1e-169 | KNOTTED-like from Arabidopsis thaliana 2 |