PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41378.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB
Protein Properties Length: 283aa    MW: 33022 Da    PI: 7.2322
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41378.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-1673118147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+d+v+ +G+ +W++Ia++++ gR++k+c++rw++ 
       KFK41378.1  73 RGHWRPAEDAKLKDLVAVYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 118
                      899*****************************.***********996 PP
2Myb_DNA-binding60.14.6e-19125168146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++T+eE+e+l +a++++G++ W+ Iar ++ gRt++++k++w+ 
       KFK41378.1 125 RKAFTEEEEERLMQAHRLYGNK-WAMIARLFP-GRTDNSVKNHWHV 168
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.76668119IPR017930Myb domain
SuperFamilySSF466894.87E-2971166IPR009057Homeodomain-like
SMARTSM007171.2E-1372121IPR001005SANT/Myb domain
PfamPF002497.7E-1673118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-2774126IPR009057Homeodomain-like
CDDcd001674.01E-1276117No hitNo description
PROSITE profilePS5129426.439120174IPR017930Myb domain
SMARTSM007172.3E-15124172IPR001005SANT/Myb domain
PfamPF002496.0E-16125167IPR001005SANT/Myb domain
CDDcd001671.58E-11127167No hitNo description
Gene3DG3DSA:1.10.10.601.1E-21127173IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSEDHHRWMD QIDSWGYFSL NINNTQHLHH QYASHKEDEA IGNPNLPNYS IYEKKETGES  60
GSCGHSSKAS VTRGHWRPAE DAKLKDLVAV YGPQNWNLIA EKLQGRSGKS CRLRWFNQLD  120
PRINRKAFTE EEEERLMQAH RLYGNKWAMI ARLFPGRTDN SVKNHWHVIM ARKFREQSSV  180
YRRRKNIFPL KPLLNPNPHS FNDFDKNHLM LPIPCFPGYD HENESPFMGE MLESQMMVGD  240
YIARTQEGTT FDSSNQTGDS EMFQKINEEN KPIFFDFLGL GTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-32711745108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41378.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2493081e-161AF249308.1 Arabidopsis thaliana putative transcription factor (MYB105) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001321037.11e-162myb domain protein 105
RefseqNP_177115.11e-162myb domain protein 105
SwissprotQ9SEZ41e-163MY105_ARATH; Transcription factor MYB105
TrEMBLA0A087HGX60.0A0A087HGX6_ARAAL; Uncharacterized protein
STRINGA0A087HGX60.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-165myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]