PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41328.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 313aa    MW: 34580.2 Da    PI: 5.2782
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41328.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.12.1e-154493255
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                r +h+  E+rRR++iN++f+ Lrel+P++     +K + a+ L ++++Y+++Lq
  KFK41328.1 44 RSKHSVTEQRRRSKINERFQILRELIPNS----EQKRDTASFLLEVIDYVQYLQ 93
                899*************************8....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-1840113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-2241115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.3554292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-134493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.96E-144497No hitNo description
SMARTSM003531.2E-114898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MRTGKGNQEE EEYGEEREGP SSNNSNSAAN RADAKENDKA SAIRSKHSVT EQRRRSKINE  60
RFQILRELIP NSEQKRDTAS FLLEVIDYVQ YLQEKVQKYE GSYPGWTQEP TKLTPWRNNH  120
WRVQSLVKHP VAINNGSGSV IPFPGKFEEN IMASAPAIVA EMQSPVESDK GRALTCNPID  180
SQPELDDKGL PPVQLFPTLV HGEQANNECP ATSNGLGQSN DMVIEGGTIS ISSVYSHELL  240
SSLTQALQNA GIDLSHAKLS VQIDLGKRAN QGLTHDEPSS KNPLSSDIEG ATQARDPSVE  300
EESEHSHKRM KTL
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41328.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526890.0AK352689.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391066.10.0transcription factor BIM2 isoform X1
SwissprotQ9CAA41e-177BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A087HGS60.0A0A087HGS6_ARAAL; Uncharacterized protein
STRINGA0A087HGS60.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59872745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-164BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]