PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41327.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 283aa    MW: 31286.7 Da    PI: 5.423
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41327.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.31.8e-154392255
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                r +h+  E+rRR++iN++f+ Lrel+P++     +K + a+ L ++++Y+++Lq
  KFK41327.1 43 RSKHSVTEQRRRSKINERFQILRELIPNS----EQKRDTASFLLEVIDYVQYLQ 92
                899*************************8....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-1839112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-2240114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.3554191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-144396No hitNo description
PfamPF000107.8E-134392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-114797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MRTGKGNQEE EEYGEEREGP SSNNSNSAAN RDAKENDKAS AIRSKHSVTE QRRRSKINER  60
FQILRELIPN SEQKRDTASF LLEVIDYVQY LQEKVQKYEG SYPGWTQEPT KLTPWRNNHW  120
RVQSLVKHPV AINNGSGSVI PFPGKFEENI MASAPAIVAE MQSPVESDKG RALTCNPIDS  180
QPELDDKGLP PVQLFPTLVH GEQANNECPA TSNGLGQSND MVIEGGTISI SSVYSHELLS  240
SLTQALQNAG IDLSHAKLSV QIDLGKRANQ GLTHDEPSKS III
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41327.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526890.0AK352689.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391065.10.0transcription factor BIM2 isoform X2
SwissprotQ9CAA41e-169BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A087HGS50.0A0A087HGS5_ARAAL; Uncharacterized protein
STRINGA0A087HGS60.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-157BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]