PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41311.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family RAV
Protein Properties Length: 345aa    MW: 38795.1 Da    PI: 9.8686
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41311.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2414.9e-1362110155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+ykGV   + +grW A+I++      ++r++lg+f  +eeAa  ++ a++k++g
  KFK41311.1  62 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAAHSYDIAARKFRG 110
                 89****9888.8*********3.....5*************************98 PP
2B3103.21.4e-32184285195
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+ tpsdv+k++rlv+pk++ae+h       + + ++++ + +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F+++   +++l
  KFK41311.1 184 FEKAVTPSDVGKLNRLVIPKQHAEKHfplplspSPSVTKGVLINFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVTFERSTGPDRQL 282
                 89***************************999844446999*************************************************876677777 PP

                 EEE CS
          B3  93 vvk 95 
                 ++ 
  KFK41311.1 283 YID 285
                 765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-762110IPR001471AP2/ERF domain
CDDcd000182.64E-2562120No hitNo description
SuperFamilySSF541717.85E-1762119IPR016177DNA-binding domain
SMARTSM003802.7E-2963124IPR001471AP2/ERF domain
PROSITE profilePS5103220.20563118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-2063118IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.2E-40173290IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-31181281IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-28183275No hitNo description
SMARTSM010193.8E-26184290IPR003340B3 DNA binding domain
PROSITE profilePS5086314.015184290IPR003340B3 DNA binding domain
PfamPF023623.3E-29184286IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MVSSCIDEIS STSESFPTAK KFSPPPPPPA ALRLYRMGSD GSSVVLDSEN CVETESRKLP  60
SSKYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEEEAAHS YDIAARKFRG RDAVVNFKTT  120
LDDDVLAFLE AHSKAEIVDM LRKHTYADEL DQSNKRRILS VDVNGKPKVT SQNDSVSRTR  180
EVLFEKAVTP SDVGKLNRLV IPKQHAEKHF PLPLSPSPSV TKGVLINFED VTGKVWRFRY  240
SYWNSSQSYV LTKGWSRFVK EKNLRAGDVV TFERSTGPDR QLYIDWKIRS GPSNNPVQVV  300
VRLFGVDIFN AKPNDVVAVC GGKRSRDVDM FALRCSKKQA IINAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-6018129111119DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41311.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001185352.10.0related to ABI3/VP1 2
RefseqNP_564947.10.0related to ABI3/VP1 2
SwissprotP822800.0RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A087HGQ90.0A0A087HGQ9_ARAAL; Ap2 erf and b3 domain-containing transcription factor rav2
STRINGA0A087HGQ90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.20.0related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]