PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK41176.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | ARR-B | ||||||||
Protein Properties | Length: 529aa MW: 59198.2 Da PI: 5.0449 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 82.6 | 4.3e-26 | 189 | 243 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ eLH++Fv+av+q+G +kA Pk+il+lm+v+ Lt+e+v+SHLQkYRl KFK41176.1 189 KARVVWSFELHQKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL 243 68****************************************************8 PP | |||||||
2 | Response_reg | 79.6 | 1.1e-26 | 12 | 118 | 1 | 107 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+p+ +++l+++l+k y ev+++ +++al+ll+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + + + ++ Ga KFK41176.1 12 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLARDALKLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEL-DLPVIMMSVDGETSRVMKGVQHGAC 106 89*********************.***************999999**********************5543.7************************ PP EEEESS--HHHH CS Response_reg 96 dflsKpfdpeel 107 d+l Kp+ ++el KFK41176.1 107 DYLLKPIRMKEL 118 *******99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 6.8E-148 | 1 | 523 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 3.9E-43 | 9 | 133 | No hit | No description |
SuperFamily | SSF52172 | 5.55E-35 | 9 | 131 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 2.3E-31 | 10 | 122 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.312 | 11 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 6.9E-24 | 12 | 119 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.33E-30 | 13 | 126 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-28 | 186 | 248 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.4E-16 | 187 | 247 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-22 | 189 | 243 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.1E-7 | 191 | 242 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 529 aa Download sequence Send to blast |
MEKGFSPVGL RVLVVDDDPT WLKILEKMLK KCSYEVTTCG LARDALKLLR ERKDGYDIVI 60 SDVNMPDMDG FKLLEHVGLE LDLPVIMMSV DGETSRVMKG VQHGACDYLL KPIRMKELKI 120 IWQHVLRKKL QEVRDIEGCY EGAADWITRN DEAHFLGGGE DVSFGKKRKD FDFEKKLLQD 180 ESDPSSSKKA RVVWSFELHQ KFVNAVNQIG CDHKAGPKKI LDLMNVPWLT RENVASHLQK 240 YRLYLSRLEK GKELKCYSGG AKNMDSSLKD AEVNSGHQSP GKSSYAFSGG NSLLHKATET 300 DPNPLASASV SDPNTDVHMP PKAKKTRIGF DPPLSSSAFD SLLPWSDVPE ALESKPPILY 360 DNSFLQQQPL PSQSSYASNS APSLMEEEMK PSYETPVGGT CVNTEFLMPQ DKSPTVTLQD 420 LDLSAPSAIS CMKLQDFSLN VTNNTESILR SLNWELPESH HSGSLDTDLD LSWLQGERFL 480 ANTGLLQFQD YSSSPSLLSE LPPHLWFGNE RLPEPDEYSF MVDQGLFIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-17 | 185 | 248 | 1 | 63 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00010 | PBM | Transfer from AT1G67710 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK41176.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB041532 | 0.0 | AB041532.1 Arabidopsis thaliana ARR11 mRNA for response regulator 11, complete cds. | |||
GenBank | AK228216 | 0.0 | AK228216.1 Arabidopsis thaliana mRNA for response regulator 11, complete cds, clone: RAFL14-66-N10. | |||
GenBank | BT008768 | 0.0 | BT008768.1 Arabidopsis thaliana At1g67710 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006391233.1 | 0.0 | two-component response regulator ARR11 | ||||
Swissprot | Q9FXD6 | 0.0 | ARR11_ARATH; Two-component response regulator ARR11 | ||||
TrEMBL | A0A087HGC4 | 0.0 | A0A087HGC4_ARAAL; Two-component response regulator | ||||
STRING | A0A087HGC4 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8066 | 27 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 0.0 | response regulator 11 |
Publications ? help Back to Top | |||
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