PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41134.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family CAMTA
Protein Properties Length: 1045aa    MW: 116540 Da    PI: 5.6209
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41134.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1169.93.7e-53111272117
        CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                 ++e ++rwlk+ e++ iL+n+e+++lt++++++p+sgsl+L+n+  +++frkDG++w++kkdg+++ E+he+LKvg+ e+l+cyYah+e++p+fqrr+y
  KFK41134.1  11 YQEaQTRWLKPPEVHFILQNHERYQLTHKAPQKPTSGSLFLFNKNELKFFRKDGHQWRRKKDGRAIAEAHERLKVGNAEALNCYYAHGEHDPHFQRRIY 109
                 56769********************************************************************************************** PP

        CG-1 100 wlLeeelekivlvhylev 117
                 w+L+ee+++ivlvhy++v
  KFK41134.1 110 WMLDEEYKHIVLVHYRDV 127
                 ****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143773.5247133IPR005559CG-1 DNA-binding domain
SMARTSM010767.6E-7410128IPR005559CG-1 DNA-binding domain
PfamPF038591.8E-4613127IPR005559CG-1 DNA-binding domain
SMARTSM004295.9E-4467553IPR002909IPT domain
PfamPF018334.9E-10469552IPR002909IPT domain
CDDcd001027.78E-8469554No hitNo description
SuperFamilySSF812961.4E-17469553IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.109.7E-9469556IPR013783Immunoglobulin-like fold
Gene3DG3DSA:1.25.40.201.2E-13668763IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.159669761IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.23E-14672763IPR020683Ankyrin repeat-containing domain
CDDcd002041.51E-12674761No hitNo description
PfamPF127961.6E-6692762IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0073702731IPR002110Ankyrin repeat
PROSITE profilePS5008810.446702734IPR002110Ankyrin repeat
SMARTSM0001517819841IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.19E-8820928IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.876820848IPR000048IQ motif, EF-hand binding site
SMARTSM000151.5876898IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.352877906IPR000048IQ motif, EF-hand binding site
PfamPF006120.0098878897IPR000048IQ motif, EF-hand binding site
SMARTSM000153.8E-4899921IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.865900924IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-4902921IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1045 aa     Download sequence    Send to blast
MQSEYEISVL YQEAQTRWLK PPEVHFILQN HERYQLTHKA PQKPTSGSLF LFNKNELKFF  60
RKDGHQWRRK KDGRAIAEAH ERLKVGNAEA LNCYYAHGEH DPHFQRRIYW MLDEEYKHIV  120
LVHYRDVSEG QEGNQSSGHI LQFSSDPATL FSSPSSIGTQ NASYNHQFGD STDIQQHSSS  180
SPGLAEVNSD VMFMSSRVET PGGSGNSSEF EKLQALKNIE KLLSIEDDNV NTVVDPLYIQ  240
NESLDSLQYL DIDHVSQPAT VYNRPESNKL ERCYGGYVGA HYNADSVDPL YTQKESLDSL  300
QFLEGAKDIN HLTQPATVLQ RPDNNKLERC YGGYVGAQYH SNNLMLVKND SGGSNGGHGD  360
QESESWKEVL EACEATIALH SEGSTPSSAK GLLVGMQEDS NWSYNNQGDQ STQLLPQELG  420
SFNIPACYSE LGAPENNVEY CRMMDDEGKI GVPLEQEMRF TVAQKQKFTI QDISPEWGYA  480
NESTKVIIIG SFLCDPTEST WSCMFGSAQV PCEIIKEGVI RCEAPPCGPG KVNLCITAGD  540
RLSCSQIRAF EYREKPGTSC PTCSIPQACD MSTSPEELKL LVKFVQTLLS DPLSDRKSNL  600
EPGIDKLLKK LKADDDQWNH VIETIRDGTA SSSRTVDWLL QELLKDKLDA WLSSRSQDED  660
QTSCSLSKKE QGIIHMIAGL GFEWALYPIL SHGVSVDFRN IKGWSALHWA AKFGSEKMVA  720
ALIASGASAG AVTDPSAQDP VGKTAASIAA SNGHKGLAGY LSEVALTNHL SLLTLEETEN  780
SKDFAQVEAE RALNSISEQS PLGDEDQHSL KDTLAAVRNA AQAAARIQAA FRAHSFRKRQ  840
QREAAMAACL QEYGIYCADI EGISAMSKRA FGNVKNYHSA ALSIQKKYRG YKGRKDFLAL  900
RQKVVKIQAH VRGYQIRKHY KVICWAVGIL DKVVLRWRRK GVGLRGFRQD VETTEDSEDE  960
DILKVFRKQK VDGAVNEAFS RVLSMANSPE ARQQYKRVLK RYCQTKAELG KTETLGRVGD  1020
DDDDDDGLFD IADMEFDDLF SLPLP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41134.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024013774.10.0calmodulin-binding transcription activator 4 isoform X2
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A087HG820.0A0A087HG82_ARAAL; Uncharacterized protein
STRINGA0A087HG810.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]