PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41133.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family CAMTA
Protein Properties Length: 1046aa    MW: 116669 Da    PI: 5.6209
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41133.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1169.93.7e-53111272117
        CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                 ++e ++rwlk+ e++ iL+n+e+++lt++++++p+sgsl+L+n+  +++frkDG++w++kkdg+++ E+he+LKvg+ e+l+cyYah+e++p+fqrr+y
  KFK41133.1  11 YQEaQTRWLKPPEVHFILQNHERYQLTHKAPQKPTSGSLFLFNKNELKFFRKDGHQWRRKKDGRAIAEAHERLKVGNAEALNCYYAHGEHDPHFQRRIY 109
                 56769********************************************************************************************** PP

        CG-1 100 wlLeeelekivlvhylev 117
                 w+L+ee+++ivlvhy++v
  KFK41133.1 110 WMLDEEYKHIVLVHYRDV 127
                 ****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143773.5247133IPR005559CG-1 DNA-binding domain
SMARTSM010767.6E-7410128IPR005559CG-1 DNA-binding domain
PfamPF038591.8E-4613127IPR005559CG-1 DNA-binding domain
SMARTSM004295.9E-4468554IPR002909IPT domain
CDDcd001027.79E-8470555No hitNo description
PfamPF018334.9E-10470553IPR002909IPT domain
SuperFamilySSF812961.4E-17470554IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.109.7E-9470557IPR013783Immunoglobulin-like fold
Gene3DG3DSA:1.25.40.209.4E-14669764IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.159670762IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.23E-14673764IPR020683Ankyrin repeat-containing domain
CDDcd002041.51E-12675762No hitNo description
PfamPF127961.6E-6693763IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.446703735IPR002110Ankyrin repeat
SMARTSM002480.0073703732IPR002110Ankyrin repeat
SMARTSM0001517820842IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.876821849IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525404.78E-8821929IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000151.5877899IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.352878907IPR000048IQ motif, EF-hand binding site
PfamPF006120.0098879898IPR000048IQ motif, EF-hand binding site
SMARTSM000153.8E-4900922IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.865901925IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-4903922IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1046 aa     Download sequence    Send to blast
MQSEYEISVL YQEAQTRWLK PPEVHFILQN HERYQLTHKA PQKPTSGSLF LFNKNELKFF  60
RKDGHQWRRK KDGRAIAEAH ERLKVGNAEA LNCYYAHGEH DPHFQRRIYW MLDEEYKHIV  120
LVHYRDVSEG QEGNQSSGHI LQFSSDPATL FSSPSSIGTQ NASYNHQFGD STDIQQHSSS  180
SPGLAEVNSD VMFMSSRVET PGGSGNSSEF EKLQALKNIE KLLSIEDDNV NTVVDPLYIQ  240
NESLDSLQYL DIDHVSQPAT VYNRPESNKL ERCYGGYVGA HYNADSVDPL YTQKESLDSL  300
QFLEGAKDIN HLTQPATVLQ RPDNNKLERC YGGYVGAQYH SNNLMLVKND SGGSNGGHGD  360
QESESWKEVL EACEATIALH SEQGSTPSSA KGLLVGMQED SNWSYNNQGD QSTQLLPQEL  420
GSFNIPACYS ELGAPENNVE YCRMMDDEGK IGVPLEQEMR FTVAQKQKFT IQDISPEWGY  480
ANESTKVIII GSFLCDPTES TWSCMFGSAQ VPCEIIKEGV IRCEAPPCGP GKVNLCITAG  540
DRLSCSQIRA FEYREKPGTS CPTCSIPQAC DMSTSPEELK LLVKFVQTLL SDPLSDRKSN  600
LEPGIDKLLK KLKADDDQWN HVIETIRDGT ASSSRTVDWL LQELLKDKLD AWLSSRSQDE  660
DQTSCSLSKK EQGIIHMIAG LGFEWALYPI LSHGVSVDFR NIKGWSALHW AAKFGSEKMV  720
AALIASGASA GAVTDPSAQD PVGKTAASIA ASNGHKGLAG YLSEVALTNH LSLLTLEETE  780
NSKDFAQVEA ERALNSISEQ SPLGDEDQHS LKDTLAAVRN AAQAAARIQA AFRAHSFRKR  840
QQREAAMAAC LQEYGIYCAD IEGISAMSKR AFGNVKNYHS AALSIQKKYR GYKGRKDFLA  900
LRQKVVKIQA HVRGYQIRKH YKVICWAVGI LDKVVLRWRR KGVGLRGFRQ DVETTEDSED  960
EDILKVFRKQ KVDGAVNEAF SRVLSMANSP EARQQYKRVL KRYCQTKAEL GKTETLGRVG  1020
DDDDDDDGLF DIADMEFDDL FSLPLP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41133.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024013760.10.0calmodulin-binding transcription activator 4 isoform X1
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A087HG810.0A0A087HG81_ARAAL; Uncharacterized protein
STRINGA0A087HG810.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]