PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK41064.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

bHLH

Protein Properties

Length: 303aa MW: 32689.8 Da PI: 6.2387

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK41064.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.6	6.1e-10	217	258	9	55
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+ri +++ L+el+P+ +K++ +++LekA+ Y+k Lq KFK41064.1 217 AKNRRERISERLKILQELVPNG-----TKVDLVTMLEKAISYVKFLQ 258 69****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	5.6E-12	208	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.32	208	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-13	210	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.31E-12	210	262	No hit	No description
SMART	SM00353	5.0E-12	214	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.6E-7	217	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048766	Biological Process	root hair initiation
GO:0005739	Cellular Component	mitochondrion
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MALVDDHSNK PNYIAKQNSP SSEDISSPEN YGLDQPEVAY PGGGGGASAS SSSTMNSDHQ 60 QNQGFVFYPS GESIEDHNSL MDFSGSSFLN FDHNDHHESF PPSACGGGGG GGGFSFLEGN 120 NMSYGFTNWS QQHMDIISPR PIESPGTNQG HKDWLYSDST VVTTGSRHES MSPKSAGNKR 180 SYMGESTQPS KKPNSSGNGK AKPKATTSPK DPQSLAAKNR RERISERLKI LQELVPNGTK 240 VDLVTMLEKA ISYVKFLQVQ VKVLATDEFW PAQGGKAPDI SQVKDAIDAI LSSSQRDRNP 300 ITN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK41064.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006391399.1	1e-176	transcription factor bHLH83
Swissprot	Q9C707	1e-147	BH083_ARATH; Transcription factor bHLH83
TrEMBL	A0A087HG12	0.0	A0A087HG12_ARAAL; Uncharacterized protein
STRING	A0A087HG12	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4260	28	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66470.1	1e-149	ROOT HAIR DEFECTIVE6

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Coego A, et al. The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. Plant J., 2014. 77(6): p. 944-53 [PMID:24456507] Lin CY, et al. Pathways involved in vanadate-induced root hair formation in Arabidopsis. Physiol Plant, 2015. 153(1): p. 137-48 [PMID:24833217] Grierson C,Nielsen E,Ketelaarc T,Schiefelbein J Root hairs. Arabidopsis Book, 2014. 12: p. e0172 [PMID:24982600] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Moro CF, et al. S-nitrosoglutathione promotes cell wall remodelling, alters the transcriptional profile and induces root hair formation in the hairless root hair defective 6 (rhd6) mutant of Arabidopsis thaliana. New Phytol., 2017. 213(4): p. 1771-1786 [PMID:27880005] Bahmani R,Kim DG,Kim JA,Hwang S The Density and Length of Root Hairs Are Enhanced in Response to Cadmium and Arsenic by Modulating Gene Expressions Involved in Fate Determination and Morphogenesis of Root Hairs in Arabidopsis. Front Plant Sci, 2016. 7: p. 1763 [PMID:27933081] Liao X,Lovett B,Fang W,St Leger RJ Metarhizium robertsii produces indole-3-acetic acid, which promotes root growth in Arabidopsis and enhances virulence to insects. Microbiology (Reading, Engl.), 2017. 163(7): p. 980-991 [PMID:28708056] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]