PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK40869.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 134aa MW: 15628.1 Da PI: 9.5257 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 25.6 | 1.5e-08 | 7 | 36 | 22 | 50 |
HHHHHHHHHHT-EEEEEEE-TTS.EEEEEE CS SRF-TF 22 KKAeELSvLCdaevaviifsstg.klyeys 50 KKA ELS+LC+ v i +++++ l+ ++ KFK40869.1 7 KKATELSILCGNSVGFICYGPDNdSLHVWP 36 9*******************9872577776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00319 | 8.0E-7 | 4 | 33 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-8 | 4 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MYLGFKKKAT ELSILCGNSV GFICYGPDND SLHVWPENPQ TLYKLVAKFD GQRKRHCCDL 60 NDFPHFEGFS VDELMTHLAH LDSQLVGVSQ KKLHILTKTI KNASSYDRPA RLDKLVSEPM 120 WRNWKMMLRF RRLN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK40869.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_176212.1 | 8e-40 | AGAMOUS-like 49 | ||||
Swissprot | Q9ZUI9 | 7e-41 | AGL49_ARATH; Agamous-like MADS-box protein AGL49 | ||||
TrEMBL | A0A087HFG7 | 6e-97 | A0A087HFG7_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HFG7 | 1e-97 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11232 | 9 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G60040.1 | 3e-43 | AGAMOUS-like 49 |
Publications ? help Back to Top | |||
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