PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK40554.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 27841.9 Da PI: 8.4135 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.9 | 7.6e-13 | 67 | 119 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++ h +Er+RR+++ f Lr+llP ++K s ++ +Av+YIk+ q KFK40554.1 67 KKMRHRDIERQRRQEVSALFKSLRTLLPFqY---IQGKRSTSDHISQAVNYIKDIQ 119 6889*************************66...*******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.49E-14 | 63 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.37E-11 | 64 | 123 | No hit | No description |
PROSITE profile | PS50888 | 14.011 | 66 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.8E-11 | 67 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-10 | 67 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-4 | 72 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MDSVPSMLMP DLPYDDGLLF SDSFLLSPFV SYENHDVCNP VTNKNVETNK KRSLCEASKK 60 EDDRESKKMR HRDIERQRRQ EVSALFKSLR TLLPFQYIQG KRSTSDHISQ AVNYIKDIQN 120 NIKELNEKKN RIKKLSTSTE ECTSSLSSSS LSTSTLSSSC SCVGDKHITV VVMPCLVGVE 180 IIISCCLGQN KSCLSSVLQM LAQEQRLSVV SCLSKRLNQR FIHTIVSQVD NGIKINVSEL 240 QDKIVNM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK40554.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493516 | 2e-77 | AB493516.1 Arabidopsis thaliana At1g62975 mRNA for hypothetical protein, partial cds, clone: RAAt1g62975. | |||
GenBank | AF506369 | 2e-77 | AF506369.1 Arabidopsis thaliana basic helix-loop-helix transcription factor bHLH125 mRNA, complete cds. | |||
GenBank | AK228036 | 2e-77 | AK228036.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL14-54-L04. | |||
GenBank | BT006408 | 2e-77 | BT006408.1 Arabidopsis thaliana At1g62975 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_683462.1 | 1e-121 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q9LQ08 | 1e-122 | BH125_ARATH; Transcription factor bHLH125 | ||||
TrEMBL | A0A087HEK2 | 1e-179 | A0A087HEK2_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HEK2 | 1e-179 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6228 | 18 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62975.1 | 1e-105 | bHLH family protein |
Publications ? help Back to Top | |||
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