PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK40547.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family AP2
Protein Properties Length: 382aa    MW: 40823.8 Da    PI: 5.4672
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK40547.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2507.4e-163280255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+G+r++  +g+Wv eIr+p++   +kr++lg++ t+ +Aa a++ a+++l+g
  KFK40547.1 32 VYRGIRYR--NGKWVTEIRVPKK---NKRIWLGTYPTPVMAATAHDVAALALKG 80
                69****96..5*********976...4************************998 PP
2AP2445.4e-14224272255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ t e+Aa+a++  +++l+g
  KFK40547.1 224 LYRGIR-CR-SGKWVSEIREPKK---TTRVWLGTYRTQEMAAAAYDVGALALKG 272
                 69***9.55.6*********854...5*******************99999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.2693288IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-163290IPR016177DNA-binding domain
PfamPF008475.3E-93280IPR001471AP2/ERF domain
SMARTSM003808.1E-253296IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-253290IPR001471AP2/ERF domain
CDDcd000186.72E-273390No hitNo description
PRINTSPR003675.4E-63344IPR001471AP2/ERF domain
PRINTSPR003675.4E-67090IPR001471AP2/ERF domain
CDDcd000184.60E-26223282No hitNo description
PfamPF008472.3E-7223271IPR001471AP2/ERF domain
PROSITE profilePS5103218.979224280IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-16224282IPR016177DNA-binding domain
SMARTSM003802.7E-26224286IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-25224282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MPSHLYGSLS TGNDTIVPSG SGISSRKRKQ HVYRGIRYRN GKWVTEIRVP KKNKRIWLGT  60
YPTPVMAATA HDVAALALKG REALLNFPDS AQFYPLPCSN SDAHIKTAAT AAAAAVAPAA  120
IAIGEVTGDE KNEDGVCDAV GYSTREFLEE EENMHTLIVD LERAMMVDPP LSGSATCEIP  180
CPLATITTTT VSFAATSSTT SGNDNNKLMA TDSGTNSGRQ KHPLYRGIRC RSGKWVSEIR  240
EPKKTTRVWL GTYRTQEMAA AAYDVGALAL KGGEAVLNFP ESVGTYPLPV SSAAAHIRIA  300
AXXXXXAVGA AAAVKGSEKK EEGVFDVAES STMEFVDEEE LLNMPGLLVD MAKGMMVAPP  360
WIGSPPSDDS PENSDGESLW SY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12429SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK40547.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112987.12e-95PREDICTED: ethylene-responsive transcription factor ERF026-like
RefseqXP_013673463.12e-95ethylene-responsive transcription factor ERF026-like
SwissprotQ9CAN92e-87ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLA0A087HEJ50.0A0A087HEJ5_ARAAL; Uncharacterized protein
STRINGA0A087HEJ50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.13e-36ERF family protein