PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KFK40028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 291aa MW: 33290.3 Da PI: 10.2831 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.8 | 2.6e-15 | 18 | 109 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffkvl +d +++ +p + +++ +++ s+++++++e+grsW+v++ +k+++ ++ ++GW+ Fv++n L + + ++F ++g+++f+l + KFK40028.1 18 FFKVLQGADISSEIKRAIPHDLVKTLSEN-DLSRKMKIKTEWGRSWKVEI--SKNPRFyFMEKAGWETFVRENFLGDSELLTFIHKGKMRFTLII 109 8999999999999999*******888555.5889****************..******555569*********************9999997765 PP | |||||||
2 | B3 | 38.9 | 1.5e-12 | 209 | 286 | 12 | 94 |
HTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 12 ksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ++ l +p +fa++h+++ + ++ ++ d e +sW+v + k+ +v+++GW + vk+ L+ g ++ F++++ +e l++ KFK40028.1 209 YLNFLAIPVSFAKDHMQE--GRTMFKIHDsEMKKSWDVAY--VKRNTNTVFSAGWIQLVKEYPLRLGNTCKFTVINPTE--LRL 286 457799*********744..5668899995666*******..7777889************************876444..344 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.3E-16 | 14 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.0E-16 | 18 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.4E-14 | 18 | 109 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.7E-17 | 18 | 113 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.52 | 18 | 113 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.55E-14 | 18 | 111 | No hit | No description |
SuperFamily | SSF101936 | 4.32E-16 | 194 | 289 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.9E-16 | 195 | 290 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.392 | 198 | 291 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-10 | 201 | 287 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.99E-8 | 201 | 277 | No hit | No description |
Pfam | PF02362 | 4.6E-9 | 208 | 284 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 291 aa Download sequence Send to blast |
MKNVDFLSCK EEREQDGFFK VLQGADISSE IKRAIPHDLV KTLSENDLSR KMKIKTEWGR 60 SWKVEISKNP RFYFMEKAGW ETFVRENFLG DSELLTFIHK GKMRFTLIIY NKDGKEMLQP 120 RQAAPFLASS SRIKTEDVKK EEVVVSSELS SLDPVTPAAE SNGRRKLNFG KMKAEESQSS 180 KRAKTKFRDS AGASSSSATG FTISIKKSYL NFLAIPVSFA KDHMQEGRTM FKIHDSEMKK 240 SWDVAYVKRN TNTVFSAGWI QLVKEYPLRL GNTCKFTVIN PTELRLDVLK P |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KFK40028.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002873422.1 | 1e-117 | B3 domain-containing protein REM23 | ||||
Swissprot | Q9LXE1 | 1e-100 | REM23_ARATH; B3 domain-containing protein REM23 | ||||
TrEMBL | A0A087HD26 | 0.0 | A0A087HD26_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HD26 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G35310.1 | 6e-94 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|