PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK39667.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 363aa    MW: 40047.5 Da    PI: 5.3206
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK39667.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.94.7e-10197244455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    ++   Ka +L + ++Y++sLq
  KFK39667.1 197 SHSLAERARREKISERMTLLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 244
                 8**************************....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.29E-17191262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.29E-11191248No hitNo description
Gene3DG3DSA:4.10.280.103.0E-17193262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542193243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-7197244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-10199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDKETEQTLN YLPLGQSDPF GNVNDGTIGD FLGRFCNPQD ISPLTLQSFS LNPQISENFP  60
RFPPYPGQFG SDREFGVLRS QPTTQESNKS SLLDPDSVSD RVQTTKSNSR KRKSIPPGNN  120
GKESPASSSL TASNSKISGE NGGTKSGKRC KQDEAGSSKN GIDKCDSKGE YKDDAKPPEA  180
PKDYIHVRAR RGQATDSHSL AERARREKIS ERMTLLQDLV PGCNRITGKA VMLDEIINYV  240
QSLQRQVEFL SMKLATINPR MEFNATAALS TEMIQPGESL TQSLYAIACS EQRLPSGYYS  300
IGKNMPRFSD TQFPSTDGFV QAETPGFWEN DLQSIVQMGF GDIQQQSSNN NCSEPTLQMK  360
LEP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108113SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00376DAPTransfer from AT3G23690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK39667.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0654410.0AY065441.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
GenBankAY0965360.0AY096536.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020887229.10.0transcription factor bHLH77
SwissprotQ9LK480.0BH077_ARATH; Transcription factor bHLH77
TrEMBLA0A087HC150.0A0A087HC15_ARAAL; Uncharacterized protein
STRINGA0A087HC150.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74062039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]