PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK39612.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | ERF | ||||||||
Protein Properties | Length: 143aa MW: 16427 Da PI: 9.7725 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.1 | 1.4e-20 | 18 | 70 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+++GVr+++ +g+++AeIrdps ng +r +lg+f tae+Aa+a+++a+ +l+g+ KFK39612.1 18 SRFRGVRRRP-WGKFAAEIRDPSRNG--ARLWLGTFETAEDAARAYDRAAFNLRGH 70 789*******.**********98887..**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-24 | 18 | 78 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.77E-18 | 18 | 78 | No hit | No description |
Pfam | PF00847 | 2.0E-14 | 18 | 70 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 19 | 79 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.513 | 19 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-36 | 19 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-11 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-11 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MEGSNRRSNS QLQDDKQSRF RGVRRRPWGK FAAEIRDPSR NGARLWLGTF ETAEDAARAY 60 DRAAFNLRGH LAILNFPNEY YSRMDDSSLR PPYAASSSSS SSGSTSTGVS RQNQREVFEF 120 EYLDNRVLEE LLESEEKKKR NHG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-31 | 16 | 127 | 11 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK39612.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010488371.1 | 3e-77 | PREDICTED: ethylene-responsive transcription factor ERF098-like | ||||
Refseq | XP_010488372.1 | 3e-77 | PREDICTED: ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 1e-72 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A087HBW0 | 1e-99 | A0A087HBW0_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HBW0 | 1e-100 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 3e-54 | ERF family protein |
Publications ? help Back to Top | |||
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