PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK39612.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 143aa    MW: 16427 Da    PI: 9.7725
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK39612.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-201870156
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                s+++GVr+++ +g+++AeIrdps ng  +r +lg+f tae+Aa+a+++a+ +l+g+
  KFK39612.1 18 SRFRGVRRRP-WGKFAAEIRDPSRNG--ARLWLGTFETAEDAARAYDRAAFNLRGH 70
                789*******.**********98887..**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-241878IPR016177DNA-binding domain
CDDcd000187.77E-181878No hitNo description
PfamPF008472.0E-141870IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-311979IPR001471AP2/ERF domain
PROSITE profilePS5103224.5131977IPR001471AP2/ERF domain
SMARTSM003801.1E-361983IPR001471AP2/ERF domain
PRINTSPR003676.7E-112031IPR001471AP2/ERF domain
PRINTSPR003676.7E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MEGSNRRSNS QLQDDKQSRF RGVRRRPWGK FAAEIRDPSR NGARLWLGTF ETAEDAARAY  60
DRAAFNLRGH LAILNFPNEY YSRMDDSSLR PPYAASSSSS SSGSTSTGVS RQNQREVFEF  120
EYLDNRVLEE LLESEEKKKR NHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-311612711114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK39612.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488371.13e-77PREDICTED: ethylene-responsive transcription factor ERF098-like
RefseqXP_010488372.13e-77PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-72ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A087HBW01e-99A0A087HBW0_ARAAL; Uncharacterized protein
STRINGA0A087HBW01e-100(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.13e-54ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]