PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK39609.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

bHLH

Protein Properties

Length: 326aa MW: 36378.5 Da PI: 4.8839

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK39609.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.6	1.2e-09	175	221	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RR+++N++f L ++l + + +K +K++i A++ +k+L KFK39609.1 175 KAGREKLRREQLNDKFMDLSSVLEPT---RTPKTDKSAIIDDAIRAVKQL 221 5669*******************9...9****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.16E-12	163	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.347	170	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-7	176	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-7	176	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-10	178	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.64E-7	178	222	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MYPSLVDDDD LLAALCFDQS NGAIDPYAFI QTDQENIFSD FGSTGVNLQQ EQERVCNVGD 60 QFDSFIGNLP QVSSFRRENN DLRVPYGSSS IGSSQFDLAS VSYSGVLQQE TQQVGGFRDD 120 LGTRVQQEPE QVCSGVVEIN SSSSVGGVKE ELEHVEEECS RKRGRSGSCS KPGTKAGREK 180 LRREQLNDKF MDLSSVLEPT RTPKTDKSAI IDDAIRAVKQ LRGEAHELKE TNQKLLEEIK 240 SLKAEKNELR EEKLVLKADK EKIEQQMKSM AVPSPGFMPS HPAAFHPNKM AVFPGYGYYP 300 NMPMWPYLHP ADRDTSHDHL NTPRAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	184	GREKLRREQ

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00372	DAP	Transfer from AT3G23210	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK39609.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006406065.1	1e-173	transcription factor bHLH34
Swissprot	Q9LTC7	1e-155	BH034_ARATH; Transcription factor bHLH34
TrEMBL	A0A087HBV7	0.0	A0A087HBV7_ARAAL; Uncharacterized protein
STRING	A0A087HBV7	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4026	26	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23210.1	1e-135	bHLH family protein

Publications ? help Back to Top
Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]