PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK39562.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family CPP
Protein Properties Length: 508aa    MW: 55349 Da    PI: 6.8289
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK39562.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.42.1e-16307345240
         TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk 
  KFK39562.1 307 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCVDCFNKP 345
                 689**********************************96 PP
2TCR51.91.5e-16392431140
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 ++k+gCnCkks+ClkkYCeC+++g  Cs +C+Ce+CkN+ 
  KFK39562.1 392 RHKRGCNCKKSNCLKKYCECYQSGIGCSINCRCEGCKNSF 431
                 589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.4E-19306347IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.017307432IPR005172CRC domain
PfamPF036385.2E-12309344IPR005172CRC domain
SMARTSM011143.4E-17392433IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.7E-12394430IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MDTPQKTLTQ TGFPVSKLKV ENSPVFNYIN SLSPIKTVKS ISIGQTLSSL SFSSPPSVFT  60
SPHAASHSES CFRSHNDSSN PSKDDSISNK KEALVGIERS QYMLKNDTTP KVVNDTGENG  120
SCEDGGMDMQ KMCCDNVKAK SETPDWETLI AESEMFINGS PNDSEAFRCL MQRTSNSETR  180
FSGGPISTLE DANPSVGANN DSEASDALSI LHHGVRRRCL DVEIPGNNTQ TLGESSSICV  240
APSIVGLQGS TIPVLHWHDI VRDNETGEVA GQRVEEGPKS SALLELNQNI PKKKRRKFEQ  300
GGEGESSCKR CNCKKSKCLK LYCECFAAGV YCIEPCSCVD CFNKPIHKDV VLATRKQIES  360
RNPLAFAPKV IRNSDSIMEV GDDESKTPAS ARHKRGCNCK KSNCLKKYCE CYQSGIGCSI  420
NCRCEGCKNS FGRKNGSFGG LDIEQNEENE TSGKTGTTQT QHDVELFNPA PPSTPMSLRE  480
PLAQLPISSN NILHPQQSHH LHGAFGSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1630942912120Protein lin-54 homolog
5fd3_B1e-1630942912120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291295KKKRR
2291296KKKRRK
3292296KKRRK
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00044PBMTransfer from AT3G22760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK39562.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024015205.10.0protein tesmin/TSO1-like CXC 3
SwissprotQ8L5480.0TCX3_ARATH; Protein tesmin/TSO1-like CXC 3
TrEMBLA0A087HBR00.0A0A087HBR0_ARAAL; Uncharacterized protein
STRINGA0A087HBR00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14672891
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.10.0Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]