PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK39507.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

bHLH

Protein Properties

Length: 267aa MW: 30617.8 Da PI: 6.5148

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK39507.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.5	2e-07	151	188	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R++i +++ L +++P+ kK+s a+iLe++ +YI Lq KFK39507.1 151 RKKISDKIRSLEKVMPWE-----KKMSLATILEETHKYITFLQ 188 89*************9.....8**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.82	138	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-4	151	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.29E-8	151	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.03E-4	151	192	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.6E-8	151	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MEYEFDSLTE LPPIPQVYDP IMESLPPLPS SDFIITPPSF SDHYYNYNNH VQDLLNLHQH 60 VPDSVFLDST LSLLTRHHIS ESTRLDNLFN AVFSDEATTP FLRLPDLKSF DDQKPSPLPF 120 LSLSPKRRRF NISQQSPSSS AGTSSNTIDT RKKISDKIRS LEKVMPWEKK MSLATILEET 180 HKYITFLQSQ IASLFWMPLD SAYSTTTTVD HVRETQLLKS LTRQQILQVI ANSPGARTEL 240 YTRGLCVFSY EQLLSLKMMT QSVRNNL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK39507.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009145434.1	1e-80	PREDICTED: transcription factor bHLH117
Swissprot	Q9LRJ4	4e-70	BH117_ARATH; Transcription factor bHLH117
TrEMBL	A0A087HBK5	0.0	A0A087HBK5_ARAAL; Uncharacterized protein
STRING	A0A087HBK5	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13399	22	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	4e-69	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]