PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK39385.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 438aa    MW: 47899.1 Da    PI: 6.6944
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK39385.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.47.9e-063283661154
                 HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  R +++ ++++ L++l+ +      +K + a++L +A+eYIk L
  KFK39385.1 328 VRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 366
                 5778999***********98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.735317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0075323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-11327381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.74E-6327371No hitNo description
Gene3DG3DSA:4.10.280.108.6E-10331375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MGDHHDFINS GSWWKVSSSS SSSTSSSMRP SSIESGVFHD KLHSLATSDH HNHHLQMIGL  60
GLSSSQSPAD QWNQSLLRGD SKAETSFGVM LHENLNLDAT SNANANVNAN QLQESDSSHH  120
QAMWRDSQMN NSDYKPQNNR GFFLDHQFSP HGSSSTDSST VTCQGFAIDN SSNVYATTPN  180
SSSAMFHQNQ ASGFNLHDQQ PSRNQQSNLG YSQFGPSTGN YDQMGSTNSW FLRSSPPKPH  240
SPLRFSNNAT FWNPAATTGN VGHTHHDPSS NFFPPPQIQP PSFDEQPLKG ISEIRESSSS  300
EVKRGGGEQP AAKRAKSEAA SPSPAFKVRK EKMGDRIAAL QQLVSPFGKT DAASVLSEAI  360
EYIKFLHQQV SALSNPYMKS GASLQHQQSD HTKDLEVSSE EPDLRSRGLC LVPVSSTFPV  420
THDTTVDFWT PTFGGTFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK39385.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180540.0AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
GenBankBT0085800.0BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013673324.10.0transcription factor bHLH123-like isoform X1
SwissprotQ8GXT30.0BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A087HB830.0A0A087HB83_ARAAL; Uncharacterized protein
STRINGA0A087HB830.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]