PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK39192.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | TCP | ||||||||
Protein Properties | Length: 248aa MW: 26461.6 Da PI: 9.826 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 123.6 | 2.2e-38 | 32 | 209 | 3 | 118 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............. 88 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s +++++++ KFK39192.1 32 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TASVSIRGNTNNISsttctlsssldhk 129 79*************************************************************99999777.334444444344445667777777777 PP TCP 89 .................................................kaaksaa.kskksqksaasalnlakesraka 118 a++++ +++ q+++ +al ++++++++a KFK39192.1 130 pllgsspfilgkrvradedkeetmgsfatpagfwavparpdfgqvwsfaTGAPQEMfLQQQHQQQQGAALFVHQQQQQQA 209 77778888888888887777888888888888888888888888888773333333355555555554555555555444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-34 | 37 | 194 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.892 | 37 | 91 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MSNNIEGVMI TNGAITQQQQ QSSEGGGGAL VVKKPPAKDR HSKVDGRGRR IRMPIICAAR 60 VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTASVSIRG NTNNISSTTC 120 TLSSSLDHKP LLGSSPFILG KRVRADEDKE ETMGSFATPA GFWAVPARPD FGQVWSFATG 180 APQEMFLQQQ HQQQQGAALF VHQQQQQQAA MGEASAARVG NYLPGHLNLL ASLSGGAPGS 240 GRREDDPR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK39192.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024007014.1 | 1e-135 | transcription factor TCP7 | ||||
Refseq | XP_024007015.1 | 1e-135 | transcription factor TCP7 | ||||
Refseq | XP_024007016.1 | 1e-135 | transcription factor TCP7 | ||||
Refseq | XP_024007017.1 | 1e-135 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 1e-118 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A087HAP0 | 0.0 | A0A087HAP0_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HAP0 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1782 | 26 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 2e-71 | TCP family protein |